View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2949_low_4 (Length: 476)

Name: NF2949_low_4
Description: NF2949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2949_low_4
NF2949_low_4
[»] chr4 (37 HSPs)
chr4 (154-458)||(24396031-24396325)
chr4 (1-129)||(24396323-24396451)
chr4 (154-252)||(13585229-13585326)
chr4 (154-260)||(8261141-8261247)
chr4 (154-260)||(8274558-8274664)
chr4 (154-252)||(24175366-24175464)
chr4 (154-252)||(7852511-7852609)
chr4 (151-249)||(47995701-47995799)
chr4 (154-320)||(45900116-45900282)
chr4 (154-260)||(7444352-7444458)
chr4 (154-260)||(41462082-41462187)
chr4 (154-260)||(51834947-51835053)
chr4 (181-320)||(8297844-8297983)
chr4 (154-260)||(31690415-31690520)
chr4 (154-260)||(50341834-50341940)
chr4 (183-260)||(31429310-31429387)
chr4 (154-225)||(23605634-23605705)
chr4 (150-245)||(24229609-24229704)
chr4 (154-260)||(37440859-37440965)
chr4 (151-244)||(40252705-40252796)
chr4 (151-259)||(50427023-50427131)
chr4 (152-252)||(53014171-53014271)
chr4 (181-252)||(35777693-35777764)
chr4 (199-254)||(39195739-39195794)
chr4 (154-244)||(35180572-35180662)
chr4 (154-260)||(36702817-36702919)
chr4 (175-260)||(37060581-37060667)
chr4 (154-260)||(37138129-37138235)
chr4 (179-260)||(48337589-48337671)
chr4 (154-247)||(32692920-32693012)
chr4 (152-205)||(39827114-39827167)
chr4 (157-197)||(54700934-54700974)
chr4 (154-252)||(25115231-25115328)
chr4 (192-320)||(27953046-27953173)
chr4 (154-185)||(44690229-44690260)
chr4 (154-236)||(7628016-7628097)
chr4 (151-208)||(11875384-11875440)
[»] chr7 (26 HSPs)
chr7 (154-252)||(9718962-9719059)
chr7 (149-324)||(25886139-25886314)
chr7 (154-320)||(28770450-28770616)
chr7 (155-320)||(27123247-27123412)
chr7 (154-260)||(35496540-35496646)
chr7 (154-260)||(39320949-39321055)
chr7 (154-252)||(43234831-43234928)
chr7 (151-260)||(7653609-7653718)
chr7 (154-225)||(44537409-44537480)
chr7 (154-254)||(14651357-14651457)
chr7 (154-260)||(28663106-28663212)
chr7 (154-260)||(35731320-35731425)
chr7 (154-260)||(10200602-10200707)
chr7 (154-320)||(21727373-21727539)
chr7 (150-254)||(31902714-31902816)
chr7 (154-222)||(35923474-35923542)
chr7 (153-260)||(42936040-42936143)
chr7 (154-260)||(3692910-3693017)
chr7 (181-260)||(43224081-43224160)
chr7 (154-232)||(8920670-8920748)
chr7 (179-260)||(2347450-2347530)
chr7 (151-208)||(17473130-17473187)
chr7 (151-208)||(17580027-17580084)
chr7 (199-260)||(27337730-27337791)
chr7 (157-190)||(43996327-43996360)
chr7 (151-225)||(48488147-48488216)
[»] scaffold0036 (1 HSPs)
scaffold0036 (154-320)||(62492-62658)
[»] chr5 (22 HSPs)
chr5 (154-317)||(16667259-16667422)
chr5 (150-260)||(3140847-3140957)
chr5 (154-320)||(30501106-30501273)
chr5 (154-320)||(30541449-30541616)
chr5 (153-324)||(2918562-2918734)
chr5 (180-260)||(9276573-9276653)
chr5 (175-317)||(7719180-7719322)
chr5 (179-260)||(8208212-8208293)
chr5 (178-249)||(34899127-34899198)
chr5 (154-260)||(17692295-17692400)
chr5 (154-252)||(18229569-18229667)
chr5 (173-232)||(7968451-7968510)
chr5 (193-320)||(24041030-24041155)
chr5 (154-260)||(39558734-39558840)
chr5 (151-260)||(8221155-8221264)
chr5 (183-260)||(14043414-14043491)
chr5 (155-260)||(15720100-15720204)
chr5 (151-259)||(112450-112558)
chr5 (181-248)||(23117221-23117288)
chr5 (154-260)||(31557994-31558099)
chr5 (384-441)||(460797-460853)
chr5 (154-202)||(40530128-40530176)
[»] chr3 (15 HSPs)
chr3 (178-260)||(26900014-26900096)
chr3 (154-320)||(48180138-48180304)
chr3 (154-252)||(29083866-29083965)
chr3 (154-260)||(24791529-24791637)
chr3 (149-232)||(45529082-45529164)
chr3 (174-249)||(51351321-51351396)
chr3 (154-217)||(12086730-12086793)
chr3 (154-205)||(30082946-30082997)
chr3 (151-208)||(46093525-46093582)
chr3 (151-203)||(23631922-23631973)
chr3 (149-208)||(21813119-21813178)
chr3 (154-260)||(39551823-39551928)
chr3 (179-232)||(25753546-25753598)
chr3 (154-247)||(48811336-48811428)
chr3 (184-260)||(40673467-40673543)
[»] chr2 (21 HSPs)
chr2 (175-324)||(19890177-19890326)
chr2 (151-320)||(1334848-1335017)
chr2 (155-220)||(19514944-19515008)
chr2 (193-259)||(7673228-7673294)
chr2 (154-260)||(31452314-31452419)
chr2 (150-260)||(41933164-41933274)
chr2 (151-252)||(15505585-15505686)
chr2 (151-260)||(31017272-31017381)
chr2 (150-260)||(34904751-34904861)
chr2 (149-260)||(29239208-29239322)
chr2 (152-187)||(18223224-18223259)
chr2 (154-217)||(28453351-28453411)
chr2 (149-260)||(34233886-34233995)
chr2 (181-260)||(37993111-37993190)
chr2 (154-260)||(13538429-13538534)
chr2 (157-190)||(36480374-36480407)
chr2 (177-260)||(9173696-9173780)
chr2 (154-329)||(4762313-4762488)
chr2 (178-260)||(22440135-22440216)
chr2 (183-260)||(20064944-20065020)
chr2 (153-254)||(40789747-40789848)
[»] chr8 (27 HSPs)
chr8 (154-260)||(27801193-27801299)
chr8 (149-320)||(42636328-42636499)
chr8 (151-248)||(2258055-2258152)
chr8 (175-260)||(1369847-1369932)
chr8 (176-260)||(33949539-33949623)
chr8 (158-260)||(4384107-4384208)
chr8 (199-293)||(167856-167950)
chr8 (154-220)||(37427264-37427329)
chr8 (154-260)||(45197410-45197516)
chr8 (150-259)||(12954762-12954871)
chr8 (154-223)||(26750620-26750689)
chr8 (177-329)||(28207588-28207741)
chr8 (154-260)||(33013078-33013183)
chr8 (178-249)||(44960507-44960577)
chr8 (154-260)||(1135194-1135300)
chr8 (175-208)||(3146125-3146158)
chr8 (154-320)||(24733145-24733310)
chr8 (177-260)||(884450-884532)
chr8 (183-254)||(12684490-12684561)
chr8 (150-260)||(9735268-9735377)
chr8 (154-200)||(29217640-29217686)
chr8 (151-260)||(3520770-3520881)
chr8 (183-260)||(24695780-24695856)
chr8 (183-260)||(35901964-35902041)
chr8 (151-208)||(43238106-43238163)
chr8 (154-198)||(16723174-16723218)
chr8 (192-260)||(33067535-33067603)
[»] chr1 (22 HSPs)
chr1 (154-260)||(6883095-6883201)
chr1 (174-320)||(4851232-4851377)
chr1 (149-318)||(45640522-45640690)
chr1 (154-260)||(2864175-2864280)
chr1 (154-260)||(43396982-43397088)
chr1 (178-320)||(39150555-39150697)
chr1 (151-225)||(14746164-14746238)
chr1 (154-260)||(38748689-38748794)
chr1 (151-260)||(47187786-47187894)
chr1 (154-254)||(44829311-44829410)
chr1 (154-201)||(34232678-34232725)
chr1 (173-260)||(42791128-42791215)
chr1 (154-260)||(3982298-3982403)
chr1 (183-260)||(32562350-32562426)
chr1 (285-324)||(4771991-4772030)
chr1 (157-188)||(7549817-7549848)
chr1 (154-217)||(14758635-14758697)
chr1 (150-259)||(31889196-31889306)
chr1 (154-205)||(36321593-36321644)
chr1 (154-220)||(7212841-7212906)
chr1 (154-260)||(44329629-44329735)
chr1 (176-260)||(44329497-44329581)
[»] chr6 (13 HSPs)
chr6 (153-260)||(7421705-7421812)
chr6 (187-320)||(3766253-3766383)
chr6 (150-260)||(17215646-17215756)
chr6 (154-252)||(23399151-23399249)
chr6 (151-249)||(30801785-30801883)
chr6 (154-259)||(32823711-32823816)
chr6 (172-260)||(31855087-31855175)
chr6 (154-220)||(19293420-19293486)
chr6 (154-252)||(2864917-2865016)
chr6 (154-247)||(4806471-4806563)
chr6 (154-236)||(13063849-13063930)
chr6 (147-188)||(7465581-7465622)
chr6 (157-189)||(3605116-3605148)
[»] scaffold0268 (1 HSPs)
scaffold0268 (154-252)||(20216-20313)
[»] scaffold0204 (1 HSPs)
scaffold0204 (179-260)||(25111-25193)
[»] scaffold1444 (1 HSPs)
scaffold1444 (151-208)||(881-938)
[»] scaffold0717 (1 HSPs)
scaffold0717 (154-190)||(4926-4962)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 6e-66; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 154 - 458
Target Start/End: Complemental strand, 24396325 - 24396031
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||   |||| ||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||        ||||||||||| ||     
T  24396325 aaatgttaaccgatgtcttcgtgacactctttaagtactttaaatggtaagttttatatgaaaagttatgtaatgaag-------aaattgtaataatta 24396233  T
Q  254 aatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaaaaccattttctattatgtcgtactacatatgat 353  Q
      |||||       ||||||| |||||| | ||||||||| |||  ||||||  ||||  ||||||| |   ||||||||| ||||||| ||||||||||    
T  24396232 cctttttaaaagaataattttcaaatttaaaatgcttaaaaagtgtcccggaaacactgattaacaagattcttttctattttgtcgtattacatatgat 24396133  T
Q  354 tttaaccatctaggagcaagttgcattgtattaatttatcactcacatcttcttatattgatacgtacaaccaacattaaataccaaacaagaaccacct 453  Q
    ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24396132 tttaaccatc---gagcaagttgcattgtattaatttatcactcacatcttcttatattgatacgtacaaccaacattaaataccaaacaagaaccacct 24396036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 24396451 - 24396323
Alignment:
Q  1 ttctcatgattttgatacctctttggggttaatatttgggttatagccacgactacacctagcaatcatatttatatctctctcagctaactacccgaag 100  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  24396451 ttctcatgattttgatacctctttggagttaatattttggttatagccacgactacaccttgcaatcatatttatatctctctcagctaactaccctaag 24396352  T
Q  101 agattggtttggctttcataaaattgaaa 129  Q
    ||||||||||||||||||||||| |||||    
T  24396351 agattggtttggctttcataaaagtgaaa 24396323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 13585229 - 13585326
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 252  Q
    |||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| |||  ||| |||||||||| ||||    
T  13585229 aaatgttaacgagtgtcctcag-acactctttaagcactttaaatggtaagttttatatgaaaagttatgtaatgaatacattgaaaattgtaacagtt 13585326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 8261247 - 8261141
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    |||||||||||||||||   ||| ||||||| |||||||||||||||||||||||  ||||||||||||||| |||||| ||| |||||||||| |||||    
T  8261247 aaatgttaacgagtgtctctggggcactcttcaagcactttaaatagtaagtttttaatgaaaagttatgtattaaatgcattgaaaattgtaacagttg 8261148  T
Q  254 aattttt 260  Q
    | |||||    
T  8261147 acttttt 8261141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 8274664 - 8274558
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    |||||||||||||||||   ||| ||||||| |||||||||||||||||||||||  ||||||||||||||| |||||| ||| |||||||||| |||||    
T  8274664 aaatgttaacgagtgtctctggggcactcttcaagcactttaaatagtaagtttttaatgaaaagttatgtattaaatgcattgaaaattgtaacagttg 8274565  T
Q  254 aattttt 260  Q
    | |||||    
T  8274564 acttttt 8274558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 24175366 - 24175464
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 252  Q
    |||||||||  |||| ||||||| ||||||||||||||||||||| ||||||||| || |||||||| |||| |||||| |||||||||||||||||||    
T  24175366 aaatgttaagaagtgccctcggggcactctttaagcactttaaatggtaagttttgtacgaaaagttgtgtattaaatgcatttaaaattgtaatagtt 24175464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 7852511 - 7852609
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 252  Q
    |||| |||||||||| |  |||| |||||||||||||||||||||||||||||||  |||||||||| |||| |||||| ||| |||||||||||||||    
T  7852511 aaatattaacgagtgccaccggggcactctttaagcactttaaatagtaagtttttaatgaaaagttgtgtattaaatgcattgaaaattgtaatagtt 7852609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 151 - 249
Target Start/End: Original strand, 47995701 - 47995799
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 249  Q
    ||||||||||||| |||||||  | ||| ||||||||||||||||||| |||||||||  ||||||||||||||| | |||| ||| ||||||||||||    
T  47995701 ggaaaatgttaacaagtgtccctgagactctctttaagcactttaaattgtaagtttttaatgaaaagttatgtattgaatgcattgaaaattgtaata 47995799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 154 - 320
Target Start/End: Original strand, 45900116 - 45900282
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||||||| ||  ||| ||||||||||||||||||| |||||||||| |||||||||||| |||| | |||| |||  ||||||| |||||||    
T  45900116 aaatgttaacgagtgccccgggggcactctttaagcactttaattagtaagtttcatatgaaaagttgtgtattgaatgcattggaaattgtgatagttg 45900215  T
Q  254 aatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 320  Q
    | ||| |       |||||   ||||||  |||||||||| ||| || ||| |||||||||||||||    
T  45900216 actttataaaagaataattgctaaatttaggatgcttaaagagtgcctcgggggcactcgttaacaa 45900282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 7444352 - 7444458
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    |||||||||||||||  | || |||||||||||| ||||||||||| ||||||||  | |||||||| |||| | |||| ||| ||||||||||||||||    
T  7444352 aaatgttaacgagtgctcccgagacactctttaaacactttaaatactaagtttttaaagaaaagttgtgtattgaatgcattgaaaattgtaatagttg 7444451  T
Q  254 aattttt 260  Q
    | |||||    
T  7444452 acttttt 7444458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 41462187 - 41462082
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||||||| | ||| | ||||||||||||| |||||||||||||||||  ||||||| ||||||| |||||| ||   |||||||||||||||    
T  41462187 aaatgttaacgagtgccttcgag-cactctttaagcattttaaatagtaagtttttaatgaaaaattatgtattaaatgcataagaaattgtaatagttg 41462089  T
Q  254 aattttt 260  Q
    | |||||    
T  41462088 acttttt 41462082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 51835053 - 51834947
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    |||||||||||||||| | || |||||||||||| ||||||||||||||| ||||  |||||||||| |||| | |||| |||  ||||| |||||||||    
T  51835053 aaatgttaacgagtgttcccgagacactctttaaacactttaaatagtaaatttttaatgaaaagttgtgtatttaatgcattggaaattataatagttg 51834954  T
Q  254 aattttt 260  Q
    | |||||    
T  51834953 acttttt 51834947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 320
Target Start/End: Complemental strand, 8297983 - 8297844
Alignment:
Q  181 tctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttttnnnnnnntaattttaaaatt 280  Q
    ||||||||||||||||||||||||||||  ||||||| || |||| | |||| |||  ||||||||| ||||||  ||||       |||||   |||||    
T  8297983 tctttaagcactttaaatagtaagtttttaatgaaaaattgtgtattgaatgcattggaaattgtaacagttgacattttaaaagaataattactaaatt 8297884  T
Q  281 tgagatgcttaaatagtaccccggaggcactcgttaacaa 320  Q
    || |||||||||| ||| |||||| |||||||||||||||    
T  8297883 tgggatgcttaaagagtgccccgggggcactcgttaacaa 8297844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 31690520 - 31690415
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||||||| |||||| |||||| |||| ||||||||||||||| |||  ||||||||||| |||| | |||| ||| ||||||| || |||||    
T  31690520 aaatgttaacgagtgccctcgg-acactccttaaacactttaaatagtaaatttcttatgaaaagttgtgtattcaatgcattgaaaattgcaacagttg 31690422  T
Q  254 aattttt 260  Q
    | |||||    
T  31690421 acttttt 31690415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 50341834 - 50341940
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    |||||||||| |||||  |||||  ||||||||||||||||| ||||||| ||||| |||||||||| |||| | ||||  ||  |||||||||||||||    
T  50341834 aaatgttaacaagtgttttcggggtactctttaagcactttatatagtaaattttaaatgaaaagttgtgtattgaatgcgttggaaattgtaatagttg 50341933  T
Q  254 aattttt 260  Q
    | |||||    
T  50341934 acttttt 50341940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 31429387 - 31429310
Alignment:
Q  183 tttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    |||||||||||||| |||||||||||| |||||||||| |||| | |||| |||  |||||||||||||||| |||||    
T  31429387 tttaagcactttaattagtaagttttaaatgaaaagttgtgtattgaatgcattggaaattgtaatagttgatttttt 31429310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 23605634 - 23605705
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgta 225  Q
    |||||||||||||||||  ||||| ||| |||||||||||||||| |||||||||  |||||||||| ||||    
T  23605634 aaatgttaacgagtgtctccgggatactttttaagcactttaaatggtaagtttttaatgaaaagttgtgta 23605705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 24229609 - 24229704
Alignment:
Q  150 tggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgt 245  Q
    ||||||||||||||| |||  | || ||||||||||||||||||||||||  |||||||  ||||||| || |||| |||||| ||| ||||||||    
T  24229609 tggaaaatgttaacgggtgctcccgagacactctttaagcactttaaataaaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgt 24229704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 37440965 - 37440859
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||||||| ||| | ||||||||||||| ||||||||| |||| |||   ||||||| ||||||| | ||   ||| ||||||||||||||||    
T  37440965 aaatgttaacgagtgcccttgagacactctttaagtactttaaatggtaaatttataatgaaaaattatgtattgaacacattgaaaattgtaatagttg 37440866  T
Q  254 aattttt 260  Q
    | |||||    
T  37440865 acttttt 37440859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 244
Target Start/End: Complemental strand, 40252796 - 40252705
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattg 244  Q
    ||||||||||||||||||||  |||| ||||  ||||| |||||||||||||| |||| |||| |||||| |||||| |||||||| |||||||    
T  40252796 ggaaaatgttaacgagtgtctccggggcactggttaaggactttaaatagtaaatttt-tatg-aaagttgtgtaatcaatgtattgaaaattg 40252705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 50427131 - 50427023
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatag 250  Q
    |||||||||||||||||| ||  | | |||||||||| ||||||||||||||| ||||  |||||||||| |||  | | || |||  ||||||||||||    
T  50427131 ggaaaatgttaacgagtgcccctgtggcactctttaaacactttaaatagtaaatttttaatgaaaagttgtgtgttgattgcattggaaattgtaatag 50427032  T
Q  251 ttgaatttt 259  Q
    |||| ||||    
T  50427031 ttgactttt 50427023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 53014171 - 53014271
Alignment:
Q  152 gaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagt 251  Q
    ||||||||||| ||||| | |||||| | || ||||||||||||||| ||| |||||  || ||||||| |||| | ||||||||  |||||||||||||    
T  53014171 gaaaatgttaatgagtgccttcgggaaattcgttaagcactttaaatggtatgtttttaataaaaagttgtgtattgaatgtattggaaattgtaatagt 53014270  T
Q  252 t 252  Q
    |    
T  53014271 t 53014271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 35777693 - 35777764
Alignment:
Q  181 tctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 252  Q
    |||||||||||||||||| |||||||||  |||||||||| |||| | |||| |||  ||||||||||||||    
T  35777693 tctttaagcactttaaatggtaagtttttaatgaaaagttgtgtattgaatgcattagaaattgtaatagtt 35777764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 39195739 - 39195794
Alignment:
Q  199 agtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttga 254  Q
    |||||||||||||||||||||| |||| | |||| ||| |||||||||||||||||    
T  39195739 agtaagttttatatgaaaagttgtgtattcaatgcattgaaaattgtaatagttga 39195794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 244
Target Start/End: Original strand, 35180572 - 35180662
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattg 244  Q
    |||||||||||||||| | |||| |||||||||||  || ||||  |||| |||| | |||||| ||||||||| |||||||| |||||||    
T  35180572 aaatgttaacgagtgttcccggggcactctttaagacctgtaaaatgtaatttttttttgaaaaattatgtaatcaatgtattgaaaattg 35180662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 36702919 - 36702817
Alignment:
Q  154 aaatgttaacgagtgtcctc-gggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 252  Q
    |||||||||||||| ||||| |||||||||||||||||||||||    ||||||||  ||||||| || |||| | |||| ||| |||||||||||| ||    
T  36702919 aaatgttaacgagt-tcctccgggacactctttaagcactttaa----taagtttttaatgaaaaattgtgtattgaatgcattgaaaattgtaataatt 36702825  T
Q  253 gaattttt 260  Q
    || |||||    
T  36702824 gacttttt 36702817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 37060667 - 37060581
Alignment:
Q  175 ggacactctttaagcactttaaatagtaagttttatatg-aaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    ||||||| |||||||||||||||| |||||||||  ||| |||| ||||||| ||| || ||| |||||| |||||||||| |||||    
T  37060667 ggacactttttaagcactttaaatggtaagtttttaatgaaaaaattatgtattaattgcattgaaaattataatagttgatttttt 37060581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 37138129 - 37138235
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    |||||||||||||||    |||||||||||||||||| ||||| ||| ||||| | ||||||||||| |||| | | || |||  ||||| |||||||||    
T  37138129 aaatgttaacgagtgcttccgggacactctttaagcaatttaattagaaagttctttatgaaaagttgtgtattgagtgcattggaaattataatagttg 37138228  T
Q  254 aattttt 260  Q
    | |||||    
T  37138229 acttttt 37138235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 48337671 - 48337589
Alignment:
Q  179 actctttaagcactttaaatagtaag-ttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    |||||||||||| ||||||||||||| |||| ||| |||| ||  ||||| |||| ||| ||||||||||||||||| |||||    
T  48337671 actctttaagcattttaaatagtaagtttttttataaaaaattgagtaatcaatgcattgaaaattgtaatagttgatttttt 48337589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 32692920 - 32693012
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaa 247  Q
    ||||||||||||||| |  |||||||||||||||| ||  | ||||||||||||| ||||||||  | |||||| |||||||| ||| ||||||    
T  32692920 aaatgttaacgagtgcctccgggacactctttaaggaccattaatagtaagtttt-tatgaaaatatgtgtaatcaatgtattgaaatttgtaa 32693012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 39827114 - 39827167
Alignment:
Q  152 gaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagt 205  Q
    ||||||||||||||||||| |||||| || ||||||| ||| ||||||||||||    
T  39827114 gaaaatgttaacgagtgtcttcgggatacgctttaaggactataaatagtaagt 39827167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 54700974 - 54700934
Alignment:
Q  157 tgttaacgagtgtcctcgggacactctttaagcactttaaa 197  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  54700974 tgttaacgagtgtcatcgggacactctttaagcattttaaa 54700934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 25115231 - 25115328
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactcttt-aagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 252  Q
    ||||||||||| |||||| |||| |||||||| || |||||||||||||||||||| ||| ||||||| |||| | | || |||  ||||||||||||||    
T  25115231 aaatgttaacgtgtgtccccggg-cactcttttaaacactttaaatagtaagtttt-tataaaaagttgtgtattcactgcattggaaattgtaatagtt 25115328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 320
Target Start/End: Original strand, 27953046 - 27953173
Alignment:
Q  192 tttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttttnnnnnnntaattttaaaatttgagatgctta 291  Q
    ||||||| |||||||||  | |||||||| |||| | |||| ||| ||||||||||||||| | |||||       ||||  |||| |||||||||||||    
T  27953046 tttaaatggtaagtttttaacgaaaagttgtgtattgaatgcattgaaaattgtaatagttaactttttaaaataataatactaaa-tttgagatgctta 27953144  T
Q  292 aatagtaccccggaggcactcgttaacaa 320  Q
    || ||| | |||||| |||||||||||||    
T  27953145 aagagtgctccggagacactcgttaacaa 27953173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 185
Target Start/End: Original strand, 44690229 - 44690260
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactcttt 185  Q
    ||||||||||||||||||||||||||||||||    
T  44690229 aaatgttaacgagtgtcctcgggacactcttt 44690260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 236
Target Start/End: Complemental strand, 7628097 - 7628016
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatt 236  Q
    ||||||||||||||| || |||| |||||||||||  |||||||  |||| |||| | |||||||||||||||  ||||||||    
T  7628097 aaatgttaacgagtgcccccggggcactctttaagacctttaaaaggtaactttt-tttgaaaagttatgtaaccaatgtatt 7628016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 11875384 - 11875440
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagtttt 208  Q
    |||||||||||||||||||||  | ||||||||||||| ||||||||| |||| ||||    
T  11875384 ggaaaatgttaacgagtgtccctgagacactctttaag-actttaaatggtaattttt 11875440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 9718962 - 9719059
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 252  Q
    |||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| |||  ||| |||||||||| ||||    
T  9718962 aaatgttaacgagtgtcctcag-acactctttaagcactttaaatggtaagttttatatgaaaagttatgtaatgaatacattgaaaattgtaacagtt 9719059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 149 - 324
Target Start/End: Complemental strand, 25886314 - 25886139
Alignment:
Q  149 ttggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaat 248  Q
    |||| ||||||||| ||||||  |  ||||||||||||| |||||||||| ||||||||||||||||||||| |||| |||||||||| |||||||||||    
T  25886314 ttgggaaatgttaatgagtgtttttaggacactctttaaacactttaaatggtaagttttatatgaaaagttgtgtattaaatgtattgaaaattgtaat 25886215  T
Q  249 agttgaatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaaaacc 324  Q
    |||||| ||| |       ||||||  |||||| | ||| ||||| |||||||||  | |||| ||||||||||||    
T  25886214 agttgactttctaagagaataatttctaaatttaaaatgtttaaagagtaccccgaggacactagttaacaaaacc 25886139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 154 - 320
Target Start/End: Complemental strand, 28770616 - 28770450
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||||||| |  ||| |||||||||||||||| |||||||||||||||  |||||||||| |||| | |||| |||  |||||||||||||||    
T  28770616 aaatgttaacgagtgcctccggaacactctttaagcactctaaatagtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaatagttg 28770517  T
Q  254 aatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 320  Q
    | ||||        |||||   || |||| |||||||||| ||| ||||||||||||||||||||||    
T  28770516 acttttcaaaagaataattactaattttgggatgcttaaagagtgccccggaggcactcgttaacaa 28770450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 155 - 320
Target Start/End: Complemental strand, 27123412 - 27123247
Alignment:
Q  155 aatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttga 254  Q
    |||||||||||||| || |||| ||||||||||||||||||||| |||||||||  | |||||||| |||| | |||| |||  ||||||||||||||||    
T  27123412 aatgttaacgagtgcccccggggcactctttaagcactttaaatggtaagtttttaacgaaaagttgtgtacttaatgcattggaaattgtaatagttga 27123313  T
Q  255 atttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 320  Q
     |||||       | |||   ||||||| |||||||||| ||| |||||| |||||||||||||||    
T  27123312 ctttttaaaagaatgattactaaatttgggatgcttaaagagtgccccgggggcactcgttaacaa 27123247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 35496540 - 35496646
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||||||| || |||| |||||||||| |||||||||| |||||||||  ||||||| || |||||| |||| ||| ||||||||||||||||    
T  35496540 aaatgttaacgagtgcccccggggcactctttaaacactttaaatggtaagtttttaatgaaaaattgtgtaatgaatgcattgaaaattgtaatagttg 35496639  T
Q  254 aattttt 260  Q
    | |||||    
T  35496640 acttttt 35496646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 39320949 - 39321055
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||||||||| | | ||||||||||||||||||||| ||||||||||| ||| ||||||| |||| | |||  ||| ||||||||||||||||    
T  39320949 aaatgttaacgagtgtctttgagacactctttaagcactttaattagtaagttttttattaaaagttgtgtattgaatacattgaaaattgtaatagttg 39321048  T
Q  254 aattttt 260  Q
    | |||||    
T  39321049 acttttt 39321055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 252
Target Start/End: Complemental strand, 43234928 - 43234831
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 252  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||  ||||||||||||||| | |||||| |  ||||||||||||||    
T  43234928 aaatgttaacgagtgccctcggg-cactctttaagcactttaaatagtaaatttttaatgaaaagttatgtattgaatgtaatggaaattgtaatagtt 43234831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 7653718 - 7653609
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatag 250  Q
    |||||||||||||||||   | ||||||||||||||||||||||||| ||||||||||  |||||||||| |||||| |||| |||  ||||| ||||||    
T  7653718 ggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaagtaagtttttaatgaaaagttgtgtaatgaatgaattggaaattataatag 7653619  T
Q  251 ttgaattttt 260  Q
    |||| |||||    
T  7653618 ttgacttttt 7653609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 44537480 - 44537409
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgta 225  Q
    ||||||||||||||| || |||| |||||||||||||||||||||||||||||||  |||||||||||||||    
T  44537480 aaatgttaacgagtgcccccggggcactctttaagcactttaaatagtaagtttttaatgaaaagttatgta 44537409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 14651357 - 14651457
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||||||| ||||||| |||||||||||||||| |||||||| |||||  |||||||||| |||||| | || |||  ||||||||| |||||    
T  14651357 aaatgttaacgagtgccctcggggcactctttaagcacttaaaatagtaggtttttaatgaaaagttgtgtaatgattgcattggaaattgtaacagttg 14651456  T
Q  254 a 254  Q
    |    
T  14651457 a 14651457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 28663106 - 28663212
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    |||||||||||| || |  |||| ||||||||||||||||||||||||||| |||  ||||||| || |||| | |||| ||| ||||||||||||||||    
T  28663106 aaatgttaacgaatgcctccggggcactctttaagcactttaaatagtaaggttttaatgaaaaattgtgtattgaatgcattgaaaattgtaatagttg 28663205  T
Q  254 aattttt 260  Q
    | |||||    
T  28663206 acttttt 28663212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 35731425 - 35731320
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||||||| || |||| ||||||||||||||||||| ||||||||| | ||| ||||||| |||| ||| || |||  |||||||||||||||    
T  35731425 aaatgttaacgagtgcccccggg-cactctttaagcactttaattagtaagttctttataaaaagttgtgtattaagtgcattggaaattgtaatagttg 35731327  T
Q  254 aattttt 260  Q
    | |||||    
T  35731326 acttttt 35731320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 10200707 - 10200602
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||||||| | ||  |||||||||||||||||||||||  |||||||| |||  ||||||||||| | |||| |||| |||||||||  ||||    
T  10200707 aaatgttaacgagtgccttcatgacactctttaagcactttaaatgataagtttt-tatagaaagttatgtatttaatgcatttgaaattgtaacggttg 10200609  T
Q  254 aattttt 260  Q
    | |||||    
T  10200608 acttttt 10200602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 320
Target Start/End: Original strand, 21727373 - 21727539
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||||||| | | ||| |||||||||||||||| ||||  ||||||||  || || | || |||| | ||||||||  |||||||||||||||    
T  21727373 aaatgttaacgagtgcctttggggcactctttaagcacttcaaatgataagtttttaataaatatttgtgtattgaatgtattggaaattgtaatagttg 21727472  T
Q  254 aatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 320  Q
    | |||||       |||||   ||||| |||||||||||| | | ||||||||| | ||||||||||    
T  21727473 actttttaaaagaataattactaaattggagatgcttaaagaatgccccggaggtattcgttaacaa 21727539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 254
Target Start/End: Original strand, 31902714 - 31902816
Alignment:
Q  150 tggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 249  Q
    ||||||||||||||||||| || || | ||||||||||| |||||||||||||| |||| |||| ||| || |||| | |||||||| ||||||| ||||    
T  31902714 tggaaaatgttaacgagtgcccccgag-cactctttaaggactttaaatagtaaatttt-tatggaaaattgtgtagtcaatgtattgaaaattgaaata 31902811  T
Q  250 gttga 254  Q
     ||||    
T  31902812 tttga 31902816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 35923474 - 35923542
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttat 222  Q
    |||||||||||||||||  ||| ||||||||||| ||||||||||| ||||||||   |||||||||||    
T  35923474 aaatgttaacgagtgtctccggaacactctttaaacactttaaataataagtttttattgaaaagttat 35923542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 260
Target Start/End: Complemental strand, 42936143 - 42936040
Alignment:
Q  153 aaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 252  Q
    |||||||||||||||||  ||||| || ||||||  |||||||||||| |||||||| ||||||| || |||| |||||| ||| ||| |||||||||||    
T  42936143 aaaatgttaacgagtgt--tcggggcattctttatacactttaaatagcaagtttta-atgaaaaattgtgtattaaatgcattgaaa-ttgtaatagtt 42936048  T
Q  253 gaattttt 260  Q
    || |||||    
T  42936047 gatttttt 42936040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 3693017 - 3692910
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaag-ttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 252  Q
    ||||||||||||||||   |||| ||||||||||| | ||||| ||||||| |||| |||||||| || |||| | | || |||  ||||||||||||||    
T  3693017 aaatgttaacgagtgtttccggggcactctttaagtattttaattagtaagtttttttatgaaaaattgtgtattgagtgcattggaaattgtaatagtt 3692918  T
Q  253 gaattttt 260  Q
    || |||||    
T  3692917 gatttttt 3692910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 260
Target Start/End: Original strand, 43224081 - 43224160
Alignment:
Q  181 tctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    |||||||||||||||||||| |||||||  |||||||||| |||| || ||  |||  ||||||||| |||||| |||||    
T  43224081 tctttaagcactttaaatagcaagtttttaatgaaaagttgtgtattacatacattggaaattgtaacagttgacttttt 43224160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 8920670 - 8920748
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatg 232  Q
    ||||||||||||||| ||  ||| |||||||||||  |||||||  |||| |||| | |||||||||||||||| ||||    
T  8920670 aaatgttaacgagtggccctggggcactctttaagacctttaaaaggtaatttttttttgaaaagttatgtaatcaatg 8920748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 2347530 - 2347450
Alignment:
Q  179 actctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    ||||||||||||| || |||||||| |||| ||| |||| ||||||||| |||| ||| ||| |||||||| |||| |||||    
T  2347530 actctttaagcacctttaatagtaaatttt-tattaaaatttatgtaatcaatgcattgaaatttgtaatatttgatttttt 2347450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 17473187 - 17473130
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagtttt 208  Q
    ||||||||||||| ||||||| |  ||||||| |||||||||||||||  ||||||||    
T  17473187 ggaaaatgttaacaagtgtcccctagacactccttaagcactttaaatgataagtttt 17473130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 17580027 - 17580084
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagtttt 208  Q
    ||||||||||||| ||||||| |  ||||||| |||||||||||||||  ||||||||    
T  17580027 ggaaaatgttaacaagtgtcccctagacactccttaagcactttaaatgataagtttt 17580084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 27337791 - 27337730
Alignment:
Q  199 agtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    |||||||||| ||||||||||| |||| | ||||||||  ||| |||||||||||| |||||    
T  27337791 agtaagttttttatgaaaagttgtgtatttaatgtattgtaaactgtaatagttgatttttt 27337730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 43996327 - 43996360
Alignment:
Q  157 tgttaacgagtgtcctcgggacactctttaagca 190  Q
    |||||||||||||| |||||||||||||||||||    
T  43996327 tgttaacgagtgtcatcgggacactctttaagca 43996360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 48488147 - 48488216
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgta 225  Q
    ||||||||||||||||||||| || |    ||||||||||||||||||  ||||||||  |||||||||||||||    
T  48488147 ggaaaatgttaacgagtgtcc-cgag----tctttaagcactttaaatgataagtttttaatgaaaagttatgta 48488216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 154 - 320
Target Start/End: Original strand, 62492 - 62658
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    |||||||||||||||||  ||||  ||||||||||||||||||||||||||||||  || |||| ||||||| | |||| ||| ||||| ||||||||||    
T  62492 aaatgttaacgagtgtctccggggtactctttaagcactttaaatagtaagtttttaataaaaaattatgtattgaatgcattgaaaatcgtaatagttg 62591  T
Q  254 aatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 320  Q
    | |||||       |||||   |||| ||||||||||||| ||||||| |||| |||||||||||||    
T  62592 actttttaaaagaataattactaaatatgagatgcttaaagagtaccctggagacactcgttaacaa 62658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 154 - 317
Target Start/End: Original strand, 16667259 - 16667422
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    |||||||||||||||||  | | ||||| ||||||||||||||||||||||||||  ||||||| || |||| | ||||||||  ||||||||||| |||    
T  16667259 aaatgttaacgagtgtctccagaacactttttaagcactttaaatagtaagtttttaatgaaaaattgtgtattgaatgtattggaaattgtaataattg 16667358  T
Q  254 aatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaa 317  Q
    | |||||       ||||| | ||||||| |||||||||| ||| |||||||||||||| ||||    
T  16667359 actttttaaaagaataattattaaatttgtgatgcttaaagagtgccccggaggcactctttaa 16667422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 260
Target Start/End: Complemental strand, 3140957 - 3140847
Alignment:
Q  150 tggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 249  Q
    ||||||||||||| |||||| | |||||||| |||||| ||||||||||| ||||||||| || ||||||| | || |||||| ||| ||||||||||||    
T  3140957 tggaaaatgttaatgagtgttcccgggacacactttaaacactttaaataataagttttaaataaaaagttgtatattaaatgaattgaaaattgtaata 3140858  T
Q  250 gttgaattttt 260  Q
    ||||| |||||    
T  3140857 gttgacttttt 3140847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 320
Target Start/End: Original strand, 30501106 - 30501273
Alignment:
Q  154 aaatgttaacgagtgtcctc-gggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 252  Q
    ||||||||||||||| || | ||| ||||  |||||||||||||||||||||||||| |||||||||| |||| | ||||||||  ||||||||||| ||    
T  30501106 aaatgttaacgagtgccccccggggcacttgttaagcactttaaatagtaagttttaaatgaaaagttgtgtattgaatgtattggaaattgtaataatt 30501205  T
Q  253 gaatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 320  Q
    || |||||       |||||   ||||||| |||||||||| ||| ||| || |||||||||||||||    
T  30501206 gactttttaaaagaataattactaaatttgggatgcttaaagagtgccctgggggcactcgttaacaa 30501273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 320
Target Start/End: Original strand, 30541449 - 30541616
Alignment:
Q  154 aaatgttaacgagtgtcctc-gggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 252  Q
    ||||||||||||||| || | ||| ||||  |||||||||||||||||||||||||| |||||||||| |||| | ||||||||  ||||||||||| ||    
T  30541449 aaatgttaacgagtgccccccggggcacttgttaagcactttaaatagtaagttttaaatgaaaagttgtgtattgaatgtattggaaattgtaataatt 30541548  T
Q  253 gaatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 320  Q
    || |||||       |||||   ||||||| |||||||||| ||| ||| || |||||||||||||||    
T  30541549 gactttttaaaagaataattactaaatttgggatgcttaaagagtgccctgggggcactcgttaacaa 30541616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 324
Target Start/End: Original strand, 2918562 - 2918734
Alignment:
Q  153 aaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagt-aagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagt 251  Q
    ||||||||||||||| ||||  || ||||||||||||| ||||||| || || ||||  |||||||||| |||| |||||| |||  ||||| |||||||    
T  2918562 aaaatgttaacgagtatccttagggcactctttaagcattttaaattgtaaaatttttaatgaaaagttgtgtattaaatgcattggaaattataatagt 2918661  T
Q  252 tgaatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaaaacc 324  Q
    |||  ||||       ||||| | |||||||| ||||||||| ||||||||  ||||||||||||||||||||    
T  2918662 tgacatttttaaaaaataattattaaatttgaaatgcttaaagagtaccccaaaggcactcgttaacaaaacc 2918734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 9276573 - 9276653
Alignment:
Q  180 ctctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    |||||||||||||||||||||||||||||  ||||||||||||||| | |||| ||| |||||| |||||||||| |||||    
T  9276573 ctctttaagcactttaaatagtaagtttttaatgaaaagttatgtattgaatgcattgaaaattataatagttgatttttt 9276653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 175 - 317
Target Start/End: Complemental strand, 7719322 - 7719180
Alignment:
Q  175 ggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttttnnnnnnntaatttt 274  Q
    ||||||| ||||||||||||||||| ||||||||  |||||||||| |||| | ||| ||||  |||||||||||||||| |||||       |||||||    
T  7719322 ggacactttttaagcactttaaataataagtttttaatgaaaagttgtgtattgaatatattggaaattgtaatagttgattttttaaaagaataatttt 7719223  T
Q  275 aaaatttgagatgcttaaatagtaccccggaggcactcgttaa 317  Q
     |||| ||  ||||||||| |||  ||||| ||||||||||||    
T  7719222 taaatatggtatgcttaaagagtgtcccgggggcactcgttaa 7719180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 8208293 - 8208212
Alignment:
Q  179 actctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    ||||||||| ||| ||||||  ||||||||||||||||||||||||||| |||| ||| |||||||||||| |||| |||||    
T  8208293 actctttaaacacattaaatgataagttttatatgaaaagttatgtaatgaatgcattaaaaattgtaataattgacttttt 8208212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 34899127 - 34899198
Alignment:
Q  178 cactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 249  Q
    |||||||||| ||||||||||||||||||||| |||||||||||| || |||||| |||  |||||||||||    
T  34899127 cactctttaaacactttaaatagtaagttttaaatgaaaagttatatattaaatgcattagaaattgtaata 34899198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 17692400 - 17692295
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||||||| || ||||  ||||||||||||||| |||||||| |||||  |||||||||| |||| ||| || ||| |||||||||| |||||    
T  17692400 aaatgttaacgagtgcccccgggt-actctttaagcacttaaaatagtaggtttttaatgaaaagttgtgtagtaattgcattgaaaattgtaacagttg 17692302  T
Q  254 aattttt 260  Q
    | |||||    
T  17692301 acttttt 17692295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 18229569 - 18229667
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 252  Q
    |||||||||||||||    |||||||||||||||||||||||||| |||||||||  ||||||| || | || | ||||||||  ||||||||||||||    
T  18229569 aaatgttaacgagtgcttccgggacactctttaagcactttaaatggtaagtttttaatgaaaaattgtttattgaatgtattggaaattgtaatagtt 18229667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 7968510 - 7968451
Alignment:
Q  173 cgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatg 232  Q
    |||| |||||||||||||||||||||||||||||||  |||||||||| |||| ||||||    
T  7968510 cggggcactctttaagcactttaaatagtaagtttttaatgaaaagttgtgtattaaatg 7968451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 193 - 320
Target Start/End: Original strand, 24041030 - 24041155
Alignment:
Q  193 ttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttttnnnnnnntaattttaaaatttgagatgcttaa 292  Q
    ||||||||||| |||| |||||||||||||||| | ||||||||  |||||  | || ||||||||||       |||||| | ||||||| ||||||||    
T  24041030 ttaaatagtaactttt-tatgaaaagttatgtatttaatgtattggaaattaaactatttgaattttttaaagaataatttcataatttgatatgcttaa 24041128  T
Q  293 atagtaccccggaggcactcgttaacaa 320  Q
    | ||||||||||| ||||||||||||||    
T  24041129 agagtaccccgga-gcactcgttaacaa 24041155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 39558734 - 39558840
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||||||||| ||||  ||||  ||||||| |||||||||||||||||   ||||||||  ||||  ||||| |||  ||||||||| |||||    
T  39558734 aaatgttaacgagtgtcttcggagcacttcttaagcattttaaatagtaagtttttattgaaaagtcgtgtatcaaatgcattggaaattgtaacagttg 39558833  T
Q  254 aattttt 260  Q
    |||||||    
T  39558834 aattttt 39558840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 8221264 - 8221155
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatag 250  Q
    |||||||||||| |||||||  |||  || |||||||||| |||||||||||||||||  || |||| || |||| | |||| ||| ||| |||||||||    
T  8221264 ggaaaatgttaatgagtgtctccggagcattctttaagcattttaaatagtaagtttttaataaaaaattgtgtattgaatgcattgaaagttgtaatag 8221165  T
Q  251 ttgaattttt 260  Q
    |||| |||||    
T  8221164 ttgacttttt 8221155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 14043491 - 14043414
Alignment:
Q  183 tttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    |||||||| |||||||| |||||||||||| |||| || |||| |||||||| | |||||||| |||||||| |||||    
T  14043491 tttaagcattttaaatattaagttttatataaaaaattgtgtattaaatgtaatgaaaattgtgatagttgacttttt 14043414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 15720204 - 15720100
Alignment:
Q  155 aatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttga 254  Q
    |||||||||||| |||| | | ||||||||||| |||||||| ||||||||| | ||||||||||| |||| ||| |  |||  ||||||||||||||||    
T  15720204 aatgttaacgagcgtcc-cagtacactctttaaacactttaattagtaagttctttatgaaaagttgtgtattaagttcattggaaattgtaatagttga 15720106  T
Q  255 attttt 260  Q
     |||||    
T  15720105 cttttt 15720100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 259
Target Start/End: Original strand, 112450 - 112558
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatag 250  Q
    ||||| |||||||||||| ||  ||||||||||||||||||||||||||  || ||||  ||||||| || |||| |||||  ||| |||||||||  ||    
T  112450 ggaaactgttaacgagtgccccggggacactctttaagcactttaaataacaaatttttaatgaaaaattgtgtattaaatacattgaaaattgtatcag 112549  T
Q  251 ttgaatttt 259  Q
    |||| ||||    
T  112550 ttgactttt 112558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 23117221 - 23117288
Alignment:
Q  181 tctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaat 248  Q
    ||||||| || |||||||||||||||||  ||||||| ||||||| ||||||||||  ||||||||||    
T  23117221 tctttaatcattttaaatagtaagtttttaatgaaaaattatgtattaaatgtattggaaattgtaat 23117288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 31557994 - 31558099
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||||||||   |||||||||  |||||||| || |||| ||| |||| |||||||| |||| ||||||||||||| ||| |||||| | |||    
T  31557994 aaatgttaacgagtgtttacgggacacttattaagcacctttaataataaatttt-tatgaaaatttatataataaatgtattgaaatttgtaacatttg 31558092  T
Q  254 aattttt 260  Q
    | |||||    
T  31558093 atttttt 31558099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 384 - 441
Target Start/End: Original strand, 460797 - 460853
Alignment:
Q  384 ttaatttatcactcacatcttcttatattgatacgtacaaccaacattaaataccaaa 441  Q
    |||||||||||||  |||||||| | | ||||||||||||||||||||||||||||||    
T  460797 ttaatttatcactt-catcttctcacactgatacgtacaaccaacattaaataccaaa 460853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 40530128 - 40530176
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagta 202  Q
    ||||||||||||||| ||| | |||||| ||||||||||||||||||||    
T  40530128 aaatgttaacgagtgcccttgagacactttttaagcactttaaatagta 40530176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 26900014 - 26900096
Alignment:
Q  178 cactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    |||||||||| |||||||||| |||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||    
T  26900014 cactctttaaacactttaaatggtaaattttatatgaaaagttatgtaataaatgcattgaaaattgtaatagttgacttttt 26900096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 154 - 320
Target Start/End: Original strand, 48180138 - 48180304
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    |||||||||||| | ||  ||| ||||||||| | |||||||||||||||||||| ||||||| |||  ||||  |||| |||  |||||||||||||||    
T  48180138 aaatgttaacgaatatctccggaacactcttttatcactttaaatagtaagttttttatgaaatgttgggtaaccaatgcattggaaattgtaatagttg 48180237  T
Q  254 aatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 320  Q
    | |||||       ||||| | ||||| | |||||||||| |||  ||||||| |||||||||||||    
T  48180238 actttttaaaagaataattgttaaattggggatgcttaaagagtgtcccggagacactcgttaacaa 48180304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 29083866 - 29083965
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaa-tagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 252  Q
    ||||||||||||||| |  | ||| ||||||||||||||||||| |||||||||||   ||||||||| |||| |||||| ||| |||||||||||||||    
T  29083866 aaatgttaacgagtgcctccaggatactctttaagcactttaaaatagtaagtttttattgaaaagttgtgtattaaatgcattaaaaattgtaatagtt 29083965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 24791637 - 24791529
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagta---agttttatatgaaaagttatgtaataaatgtatttaaaattgtaatag 250  Q
    ||||||||||||||| ||||  ||||||||||||  |||||||||||||   ||||||  ||||||||||||||| | |||  ||| |||||||||||||    
T  24791637 aaatgttaacgagtg-cctccagacactctttaaatactttaaatagtactaagtttttaatgaaaagttatgtattgaatacattgaaaattgtaatag 24791539  T
Q  251 ttgaattttt 260  Q
    |||| |||||    
T  24791538 ttgacttttt 24791529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 45529082 - 45529164
Alignment:
Q  149 ttggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatg 232  Q
    |||| ||||||||||||||| || ||||| |||||||||||||  | ||||||||||||| |||||||| ||||||||| ||||    
T  45529082 ttgggaaatgttaacgagtgcccccgggatactctttaagcacccttaatagtaagtttt-tatgaaaatttatgtaatcaatg 45529164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 51351396 - 51351321
Alignment:
Q  174 gggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 249  Q
    |||||||||||||||||||||||| ||||||||||  ||||||| || |||| ||||||||||  ||||| |||||    
T  51351396 gggacactctttaagcactttaaaaagtaagtttttaatgaaaaattgtgtattaaatgtattggaaattataata 51351321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 12086730 - 12086793
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaa 217  Q
    ||||||||||||||| |||||||||||| |||||| |||  ||||||||||||||  |||||||    
T  12086730 aaatgttaacgagtgccctcgggacactatttaagtactcgaaatagtaagtttttaatgaaaa 12086793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 30082997 - 30082946
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagt 205  Q
    ||||||||||||||||| |||||||||||||||||  || ||||||||||||    
T  30082997 aaatgttaacgagtgtcttcgggacactctttaagacctataaatagtaagt 30082946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 46093525 - 46093582
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagtttt 208  Q
    |||||||||||||||||| |  ||||  |||||||||| |||||||||||||||||||    
T  46093525 ggaaaatgttaacgagtgcctccggggtactctttaagaactttaaatagtaagtttt 46093582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 23631922 - 23631973
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaa 203  Q
    ||||||||||||||||||||| | | |||||||||||||||||| ||||||||    
T  23631922 ggaaaatgttaacgagtgtccccag-acactctttaagcacttttaatagtaa 23631973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 21813119 - 21813178
Alignment:
Q  149 ttggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagtttt 208  Q
    |||||||||||||| |||||||||  || ||||||||||| | |||||||||||| ||||    
T  21813119 ttggaaaatgttaatgagtgtcctaagggcactctttaaggattttaaatagtaaatttt 21813178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 39551823 - 39551928
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    |||||||||||||||   || ||  ||||||||| |||||||| ||||||||| | ||||||||||| | || | | |||||| |||||||| |||||||    
T  39551823 aaatgttaacgagtgctttcagggtactctttaaacactttaattagtaagttctttatgaaaagttgtttattgagtgtattgaaaattgt-atagttg 39551921  T
Q  254 aattttt 260  Q
    | |||||    
T  39551922 atttttt 39551928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 25753598 - 25753546
Alignment:
Q  179 actctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatg 232  Q
    ||||||||||||| || ||||||||||||| |||||||| ||||||||| ||||    
T  25753598 actctttaagcacctttaatagtaagtttt-tatgaaaatttatgtaattaatg 25753546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 48811336 - 48811428
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaa 247  Q
    |||||||||||||||||  || |  |||||||||  ||||| ||||||||||||| |||||||| || |||||| |||| ||| ||| ||||||    
T  48811336 aaatgttaacgagtgtctccgaggtactctttaaaaacttttaatagtaagtttt-tatgaaaaattgtgtaatcaatgcattgaaatttgtaa 48811428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 260
Target Start/End: Complemental strand, 40673543 - 40673467
Alignment:
Q  184 ttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    |||||||||||||||  ||||||||  | |||||||  |||| | ||| ||||  ||||||||||||||||||||||    
T  40673543 ttaagcactttaaatgataagtttttaaagaaaagtagtgtattgaatatattagaaattgtaatagttgaattttt 40673467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 175 - 324
Target Start/End: Original strand, 19890177 - 19890326
Alignment:
Q  175 ggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttttnnnnnnntaatttt 274  Q
    ||||| ||||||||||||| ||||| ||||||||  |||||||||| |||| |||||| |||  |||||||||||||||| |||||       |||||      
T  19890177 ggacattctttaagcacttaaaataataagtttttaatgaaaagttgtgtattaaatgcattggaaattgtaatagttgactttttaaaagaataattac 19890276  T
Q  275 aaaatttgagatgcttaaatagtaccccggaggcactcgttaacaaaacc 324  Q
     ||||||  ||||||||||||||||||||||  |||||||||||||||||    
T  19890277 taaatttaggatgcttaaatagtaccccggaaacactcgttaacaaaacc 19890326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 151 - 320
Target Start/End: Original strand, 1334848 - 1335017
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatag 250  Q
    ||||||||||||||| ||||| |||  |||||||||||||||||||||  ||||||||  ||||||| || | || | |||| |||  ||||||||||||    
T  1334848 ggaaaatgttaacgattgtccccggagcactctttaagcactttaaatgataagtttttaatgaaaaattgtatattgaatgcattggaaattgtaatag 1334947  T
Q  251 ttgaatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 320  Q
    |||| |||||       ||||| | ||||||| |||||||||| ||| ||||||||  ||||||||||||    
T  1334948 ttgatttttttaaagaataattattaaatttgggatgcttaaagagtgccccggagatactcgttaacaa 1335017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 19515008 - 19514944
Alignment:
Q  155 aatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagtt 220  Q
    |||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||    
T  19515008 aatgttaacgagtgtcctaggg-cactctttaagcactttaaattgtaagttttatatgaaaagtt 19514944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 7673294 - 7673228
Alignment:
Q  193 ttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttt 259  Q
    ||||||| |||||||||||| ||||||| |||| |||||||||| ||||||||||||||||| ||||    
T  7673294 ttaaataataagttttatataaaaagttgtgtactaaatgtattgaaaattgtaatagttgactttt 7673228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 31452314 - 31452419
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    |||||||||||||||| | ||| ||| | |||||||||||||||||||||||||| ||  ||||||| |||| | |||| ||| ||||||||||| ||||    
T  31452314 aaatgttaacgagtgttcccggaacattatttaagcactttaaatagtaagtttt-taataaaagttgtgtattgaatgcattgaaaattgtaattgttg 31452412  T
Q  254 aattttt 260  Q
    | |||||    
T  31452413 acttttt 31452419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 260
Target Start/End: Complemental strand, 41933274 - 41933164
Alignment:
Q  150 tggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 249  Q
    |||||||| ||||||||||| | |||  ||||||||||||||||||| |||||| |||| ||| ||||||| | || | | || ||| ||||||||||||    
T  41933274 tggaaaatattaacgagtgttcccggagcactctttaagcactttaattagtaaattttttataaaaagttgtttactgagtgcattgaaaattgtaata 41933175  T
Q  250 gttgaattttt 260  Q
    ||||| |||||    
T  41933174 gttgacttttt 41933164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 252
Target Start/End: Complemental strand, 15505686 - 15505585
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatag 250  Q
    ||||||||||||||||||||   | | ||||||| || |||||||||||||||||||   |||||||||| |||| | |||||||| |||||| ||||||    
T  15505686 ggaaaatgttaacgagtgtctctgtggcactcttgaaacactttaaatagtaagtttggaatgaaaagttgtgtattgaatgtattgaaaattataatag 15505587  T
Q  251 tt 252  Q
    ||    
T  15505586 tt 15505585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 31017272 - 31017381
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatag 250  Q
    |||||||||||||||||| | ||||| || ||||||||||||||||||   |||||||  |||||||||| |||| |||||| ||| ||||||  ||||     
T  31017272 ggaaaatgttaacgagtgccttcggggcattctttaagcactttaaatgaaaagtttttaatgaaaagttgtgtattaaatgcattgaaaattaaaatat 31017371  T
Q  251 ttgaattttt 260  Q
    |||| |||||    
T  31017372 ttgacttttt 31017381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 260
Target Start/End: Original strand, 34904751 - 34904861
Alignment:
Q  150 tggaaaatgttaacgagtgtcctcggga-cactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaat 248  Q
    |||||||||| |||||||| | || ||| ||||||||||||||||||||| ||||||| |  ||||||| || |||| |||||  ||| |||||||||||    
T  34904751 tggaaaatgtcaacgagtg-cttccggagcactctttaagcactttaaattgtaagttattaatgaaaaattttgtattaaattcattaaaaattgtaat 34904849  T
Q  249 agttgaattttt 260  Q
    |||||| |||||    
T  34904850 agttgatttttt 34904861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 29239208 - 29239322
Alignment:
Q  149 ttggaaaatgttaacgagtgtcctcg---ggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgt 245  Q
    |||||||||||||| ||| |||| ||   |||||||||||||||||||||| |||||| | ||  ||||||| |  |||| | |||| ||| ||||||||    
T  29239208 ttggaaaatgttaaggagcgtccccgacgggacactctttaagcactttaattagtaaatctttaatgaaaaatggtgtattgaatgcattgaaaattgt 29239307  T
Q  246 aatagttgaattttt 260  Q
    ||||||||| |||||    
T  29239308 aatagttgacttttt 29239322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 18223259 - 18223224
Alignment:
Q  152 gaaaatgttaacgagtgtcctcgggacactctttaa 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  18223259 gaaaatgttaacgagtgtcctcgggacactctttaa 18223224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 28453411 - 28453351
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaa 217  Q
    ||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| ||||||||    
T  28453411 aaatgttaacgagtgtcct-gggacact-tttaagcacttttaatagtaagtttt-tatgaaaa 28453351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 34233886 - 34233995
Alignment:
Q  149 ttggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaat 248  Q
    ||||||||||||||||||||||||   |||||||||||||||| || |||||||| |||| |||  ||| || |||||| |||| ||| ||| |||||||    
T  34233886 ttggaaaatgttaacgagtgtcct-aagacactctttaagcacctttaatagtaaatttt-tattcaaatttgtgtaatcaatgcattgaaatttgtaat 34233983  T
Q  249 agttgaattttt 260  Q
    | |||| |||||    
T  34233984 atttgacttttt 34233995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 260
Target Start/End: Complemental strand, 37993190 - 37993111
Alignment:
Q  181 tctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    ||||||| || |||||||||||| ||||  || |||| ||||||| |||||| ||| ||||||||||||||||| |||||    
T  37993190 tctttaaacattttaaatagtaaatttttaataaaaaattatgtattaaatgcattgaaaattgtaatagttgatttttt 37993111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 13538534 - 13538429
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    |||||||||| |||| ||| |||||||||||||||    ||||||||||| |||| |||||||||||||||| | |||| |||  |||||| | || |||    
T  13538534 aaatgttaactagtgccctggggacactctttaagggtcttaaatagtaactttt-tatgaaaagttatgtattcaatgcattggaaattgaattatttg 13538436  T
Q  254 aattttt 260  Q
    |||||||    
T  13538435 aattttt 13538429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 36480374 - 36480407
Alignment:
Q  157 tgttaacgagtgtcctcgggacactctttaagca 190  Q
    ||||||||||||||||||||||||||||||||||    
T  36480374 tgttaacgagtgtcctcgggacactctttaagca 36480407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 9173696 - 9173780
Alignment:
Q  177 acactctttaagcactttaaatagtaagttttatatgaaaagttatgta-ataaatgtatttaaaattgtaatagttgaattttt 260  Q
    ||||||||||| |||||||| ||| ||||||| |||||||| || ||||  | | |||||| ||||||||||||||||| |||||    
T  9173696 acactctttaaacactttaattagcaagttttttatgaaaaattgtgtatttgattgtattgaaaattgtaatagttgatttttt 9173780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 329
Target Start/End: Complemental strand, 4762488 - 4762313
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    |||||||||||| ||| || | | |||| ||||| ||||||||||||||| ||||  || |||| || |||| | |||| ||| |||||| |||||||||    
T  4762488 aaatgttaacgaatgttcttgaggcactttttaatcactttaaatagtaaatttttaataaaaaattgtgtattgaatgcattgaaaattataatagttg 4762389  T
Q  254 aatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaaaaccatttt 329  Q
    | ||| |       |||||   ||||||| |||||||||| |||   ||||  |||||||||||||| ||||||||    
T  4762388 actttataaaataataattactaaatttgggatgcttaaacagtgatccgggagcactcgttaacaagaccatttt 4762313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 22440135 - 22440216
Alignment:
Q  178 cactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    ||||||||||| || || ||||||||||||| ||||||||  |||||||| |||| ||| ||| |||||| | ||||||||||    
T  22440135 cactctttaagtacctttaatagtaagtttt-tatgaaaatatatgtaatcaatgcattgaaacttgtaacatttgaattttt 22440216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 20065020 - 20064944
Alignment:
Q  183 tttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    |||||||||||||||||| ||| ||| |||||||| || |||| | |||  ||| ||||||||||||||||| |||||    
T  20065020 tttaagcactttaaatagaaaggttt-tatgaaaaattgtgtatttaatacattgaaaattgtaatagttgacttttt 20064944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 254
Target Start/End: Complemental strand, 40789848 - 40789747
Alignment:
Q  153 aaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 252  Q
    ||||||||||||||||||    ||||||||||||||  |||||| || |||||| | |||||||| |||| || | | |||||| |||||| ||||| ||    
T  40789848 aaaatgttaacgagtgtctctaggacactctttaagtgctttaattaataagttctttatgaaaaattatctattgagtgtattgaaaattataataatt 40789749  T
Q  253 ga 254  Q
    ||    
T  40789748 ga 40789747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 27801193 - 27801299
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    |||||||||||||||  || |||  ||||||||||||||||||||||||||||||  || ||||||| |||||| |||| ||| ||||||||||||||||    
T  27801193 aaatgttaacgagtgctcttggggtactctttaagcactttaaatagtaagtttttaataaaaagttgtgtaatgaatgcattgaaaattgtaatagttg 27801292  T
Q  254 aattttt 260  Q
    | |||||    
T  27801293 acttttt 27801299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 320
Target Start/End: Original strand, 42636328 - 42636499
Alignment:
Q  149 ttggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaat 248  Q
    |||| |||||||||||||||  | |||  ||||||||||||||||||||| |||||||||  |||||||||| |||| |||||| |||  ||||||||||    
T  42636328 ttgggaaatgttaacgagtgctcccggagcactctttaagcactttaaatggtaagtttttaatgaaaagttgtgtattaaatgcattgtaaattgtaat 42636427  T
Q  249 agttgaatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 320  Q
    |||||| |||||       |||||   ||||||| |||||||||| ||| ||||||  |||||| |||||||    
T  42636428 agttgacttttttgaataataattactaaatttgggatgcttaaagagtgccccgggagcactccttaacaa 42636499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 248
Target Start/End: Original strand, 2258055 - 2258152
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaat 248  Q
    ||||||||||| ||||||  | ||||||| |||||||||||||||||| |||||||||| |||||||||| |||| |||||  ||| |||||||||||    
T  2258055 ggaaaatgttatcgagtgcacccgggacaatctttaagcactttaaatggtaagttttaaatgaaaagttgtgtattaaatacattaaaaattgtaat 2258152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 1369847 - 1369932
Alignment:
Q  175 ggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    |||||||||||||||||||||| || |||||||||||||||||||||| || | |||| |||  ||||||| |||||||| |||||    
T  1369847 ggacactctttaagcactttaattaataagttttatatgaaaagttatctattgaatgcattggaaattgtgatagttgacttttt 1369932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 33949539 - 33949623
Alignment:
Q  176 gacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    |||||||||||| |||||||| ||||||||| | ||||||||||| |||| | | || |||| ||||||||||||||||||||||    
T  33949539 gacactctttaaacactttaattagtaagttatttatgaaaagttgtgtattgagtgcatttgaaattgtaatagttgaattttt 33949623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 158 - 260
Target Start/End: Original strand, 4384107 - 4384208
Alignment:
Q  158 gttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatt 257  Q
    |||||||||||| ||||||||||||||||||||||||||||  ||| ||||  ||| |||||| |||| | |||| |||  |||||||||||||||| ||    
T  4384107 gttaacgagtgttctcgggacactctttaagcactttaaatgataaatttttaatg-aaagttgtgtattgaatgcattggaaattgtaatagttgattt 4384205  T
Q  258 ttt 260  Q
    |||    
T  4384206 ttt 4384208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 293
Target Start/End: Original strand, 167856 - 167950
Alignment:
Q  199 agtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttttnnnnnnntaattttaaaatttgagatgcttaaa 293  Q
    ||||||||||| |||||||||||||||||||||| |||  ||||| |||||||||| |||||       ||||||| ||||||||||| ||||||    
T  167856 agtaagttttaaatgaaaagttatgtaataaatgcattggaaattataatagttgactttttaaaagaataatttttaaatttgagatacttaaa 167950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 37427329 - 37427264
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagtt 220  Q
    ||||||||||||||| |||| |||||||||||||||||||||||| ||||| |||  ||||||||||    
T  37427329 aaatgttaacgagtg-cctccggacactctttaagcactttaaatggtaagattttaatgaaaagtt 37427264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 45197516 - 45197410
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||||||| |  | ||||||||||||| ||| ||||||||||| |||| |||||||||||  ||||| |||  ||| ||||||| ||| ||||    
T  45197516 aaatgttaacgagtgcctccaggacactctttaaacacattaaatagtaaattttttatgaaaagttgggtaatcaatccattgaaaattgcaattgttg 45197417  T
Q  254 aattttt 260  Q
    | |||||    
T  45197416 acttttt 45197410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 259
Target Start/End: Complemental strand, 12954871 - 12954762
Alignment:
Q  150 tggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 249  Q
    |||||||||||||||||||||  || ||||||||||| | |||||||||  ||| ||||   |||||| || |||| ||||| |||| |||||| |||||    
T  12954871 tggaaaatgttaacgagtgtctccgagacactctttatgtactttaaatgataaatttttattgaaaaattgtgtattaaatctattgaaaattataata 12954772  T
Q  250 gttgaatttt 259  Q
    ||||| ||||    
T  12954771 gttgattttt 12954762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 26750689 - 26750620
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatg 223  Q
    |||||||||||||||  |||||  ||||||||||||||||||||||||||| |||  ||||||| |||||    
T  26750689 aaatgttaacgagtgcgctcggagcactctttaagcactttaaatagtaagattttaatgaaaaattatg 26750620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 329
Target Start/End: Complemental strand, 28207741 - 28207588
Alignment:
Q  177 acactctttaagcac-tttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttttnnnnnnntaatttta 275  Q
    ||||||||||||||| ||||||| | |||||||  |||||||||| |||| | |||| |||  |||||||||||||||| |||||       | ||| |     
T  28207741 acactctttaagcacctttaaatggaaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaatagttgactttttaaaagaattattgtt 28207642  T
Q  276 aaatttgagatgcttaaatagtaccccggaggcactcgttaacaaaaccatttt 329  Q
    ||||||| |||||||||| |||  | ||| ||||||||||||||| ||| ||||    
T  28207641 aaatttgggatgcttaaagagtgtctcgggggcactcgttaacaagaccctttt 28207588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 33013183 - 33013078
Alignment:
Q  154 aaatgttaacgagtg-tcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 252  Q
    ||||||||||||||| |||| ||  ||||||||||||||||||| ||||||||| | ||||||||||| |||| | | |  |||  ||||||||||||||    
T  33013183 aaatgttaacgagtgctcctggg--cactctttaagcactttaattagtaagttctttatgaaaagttgtgtattgagtacattggaaattgtaatagtt 33013086  T
Q  253 gaattttt 260  Q
    || |||||    
T  33013085 gacttttt 33013078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 44960577 - 44960507
Alignment:
Q  178 cactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 249  Q
    ||||||||||||||||| |||||||| |||| |||||||| ||||||||| |||| ||| ||| ||||||||    
T  44960577 cactctttaagcacttttaatagtaaatttt-tatgaaaatttatgtaatcaatgcattgaaatttgtaata 44960507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 1135300 - 1135194
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||||||| | || |  |||||||||| |||||||||| |||||||||  | |||||||| | || | |||  ||| ||||||||||||||||    
T  1135300 aaatgttaacgagtgccgtcagagcactctttaaacactttaaatggtaagtttttaaggaaaagttgtatattgaatacattgaaaattgtaatagttg 1135201  T
Q  254 aattttt 260  Q
    | |||||    
T  1135200 acttttt 1135194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 3146158 - 3146125
Alignment:
Q  175 ggacactctttaagcactttaaatagtaagtttt 208  Q
    ||||||||||||||||||||||||||||||||||    
T  3146158 ggacactctttaagcactttaaatagtaagtttt 3146125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 320
Target Start/End: Complemental strand, 24733310 - 24733145
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    |||||||||||||||||  |||| ||||||||||| || || ||||||||||||| ||| |||| || |||||| |||| | |  || |||||| | |||    
T  24733310 aaatgttaacgagtgtctccggggcactctttaagtacctttaatagtaagtttt-tataaaaatttgtgtaatcaatgcactgtaatttgtaacatttg 24733212  T
Q  254 aatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 320  Q
    | |||||       || |||| ||||||| ||| |||||| |||| ||||| | |||||||||||||    
T  24733211 acttttttagagaatattttttaaatttgggatccttaaagagtatcccggggacactcgttaacaa 24733145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 884532 - 884450
Alignment:
Q  177 acactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    |||||||||||||||||||||| | |||||||  ||||||| || |||| |||||  ||| |||||||||||| |||| |||||    
T  884532 acactctttaagcactttaaattgaaagtttttaatgaaaaattgtgtattaaat-cattgaaaattgtaataattgatttttt 884450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 254
Target Start/End: Original strand, 12684490 - 12684561
Alignment:
Q  183 tttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttga 254  Q
    ||||||||||||||||| ||| ||||  || ||||||| |||||| |||| |||  ||||||||||||||||    
T  12684490 tttaagcactttaaataataaatttttaattaaaagttttgtaatgaatgcattagaaattgtaatagttga 12684561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 260
Target Start/End: Original strand, 9735268 - 9735377
Alignment:
Q  150 tggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 249  Q
    ||||||||||||||||||||  ||| |||||| |||||  | |||||||  ||| ||||  |||||||||| |||| |||||||||| ||| |  |||||    
T  9735268 tggaaaatgttaacgagtgt-ttcgagacactttttaaatattttaaatgataaatttttaatgaaaagttgtgtattaaatgtattgaaagtcataata 9735366  T
Q  250 gttgaattttt 260  Q
    ||||| |||||    
T  9735367 gttgacttttt 9735377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 29217686 - 29217640
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatag 200  Q
    ||||||||||||| |||||| |||||| ||||||||||||| |||||    
T  29217686 aaatgttaacgagcgtcctccggacacactttaagcacttttaatag 29217640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 3520770 - 3520881
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaa----gttttatatgaaaagttatgtaataaatgtatttaaaattgta 246  Q
    ||||||| ||||| ||||| ||  ||||||| ||||||||||| ||||| |||    |||||  ||||||||||||||| | |||| ||| |||| ||||    
T  3520770 ggaaaatattaacaagtgttct--ggacactttttaagcacttgaaataataaataagtttttaatgaaaagttatgtattgaatgcattaaaaactgta 3520867  T
Q  247 atagttgaattttt 260  Q
    |||||||| |||||    
T  3520868 atagttgatttttt 3520881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 24695856 - 24695780
Alignment:
Q  183 tttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    ||||| ||||||||||||||||||||| || ||||||| |||| | | || |||  |||||||||||||||| |||||    
T  24695856 tttaaacactttaaatagtaagtttta-ataaaaagttgtgtattcactgcattagaaattgtaatagttgacttttt 24695780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 35902041 - 35901964
Alignment:
Q  183 tttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    |||||||| |||||||| ||||||||  |||||||||| |||| | |||| |||  ||||||||||| |||| |||||    
T  35902041 tttaagcattttaaataataagtttttaatgaaaagttctgtattgaatgcattggaaattgtaataattgacttttt 35901964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 43238106 - 43238163
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagtttt 208  Q
    |||||||||||||||||| |||  |  ||||||||||| |||||||||||||| ||||    
T  43238106 ggaaaatgttaacgagtgccctaagtgcactctttaagaactttaaatagtaaatttt 43238163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 16723174 - 16723218
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaat 198  Q
    ||||||||||||||| || || |||||| ||||||||||||||||    
T  16723174 aaatgttaacgagtgcccccgagacactttttaagcactttaaat 16723218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 33067603 - 33067535
Alignment:
Q  192 tttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    |||||||||||||||||| |||||||||| |||| | |||| |||  | ||||||||| |||| |||||    
T  33067603 tttaaatagtaagttttaaatgaaaagttttgtattgaatgcattagacattgtaataattgacttttt 33067535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 6883095 - 6883201
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||||||| | | | || ||||||||| ||||||||||  ||| ||||||||||||||||||||||| |||| |||| |||||||||||||||    
T  6883095 aaatgttaacgagtgcctttgagatactctttaaacactttaaatgataaattttatatgaaaagttatgtaatgaatgcatttgaaattgtaatagttg 6883194  T
Q  254 aattttt 260  Q
    | |||||    
T  6883195 atttttt 6883201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 174 - 320
Target Start/End: Original strand, 4851232 - 4851377
Alignment:
Q  174 gggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttttnnnnnnntaattt 273  Q
    |||| |||||||||||||||||| ||||||||| | |||||||||||  ||| ||| || |||| |||||||||||||||| |||||       ||||||    
T  4851232 gggatactctttaagcactttaattagtaagttctttatgaaaagttgggtagtaagtgcatttgaaattgtaatagttgacttttt-aaagaataattt 4851330  T
Q  274 taaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 320  Q
    | ||| |||| ||||||||| |||  |||||||||||||||||||||    
T  4851331 ttaaaattgacatgcttaaagagtgtcccggaggcactcgttaacaa 4851377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 149 - 318
Target Start/End: Complemental strand, 45640690 - 45640522
Alignment:
Q  149 ttggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaat 248  Q
    |||| |||||||||||||||||| || ||||||||||||||| |||||||||||||||||  ||||||| || |||||| |||| ||| |||||| ||||    
T  45640690 ttgggaaatgttaacgagtgtccccgagacactctttaagcattttaaatagtaagtttttgatgaaaa-ttgtgtaatgaatgcattgaaaattataat 45640592  T
Q  249 agttgaatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaac 318  Q
    | |||| |||||       || || | ||||||| ||||||| || |||  ||||||| |||||||||||    
T  45640591 aattgactttttgaaagaatagttcttaaatttgggatgctttaaaagtgtcccggagacactcgttaac 45640522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 2864280 - 2864175
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||||||| || |||  |||||||||||||||||||||||||||||||  |||||||||| |||| | |||| |||  |||||||||||||||    
T  2864280 aaatgttaacgagtgccc-cggagcactctttaagcactttaaatagtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaatagttg 2864182  T
Q  254 aattttt 260  Q
    | |||||    
T  2864181 acttttt 2864175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 43396982 - 43397088
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||||||| ||||||  ||||| |||| ||||||||||||||||||||  |||||||||| |||| |||||| |||  ||||| |||||||||    
T  43396982 aaatgttaacgagtgccctcggcgcactcgttaaacactttaaatagtaagtttttaatgaaaagttgtgtattaaatgcattggaaattataatagttg 43397081  T
Q  254 aattttt 260  Q
    | |||||    
T  43397082 acttttt 43397088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 178 - 320
Target Start/End: Complemental strand, 39150697 - 39150555
Alignment:
Q  178 cactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttttnnnnnnntaattttaaa 277  Q
    ||||||||||||||||||| ||||||| |||  ||||||| ||||||| | |||| |||  |||||||||||||||| |||||       |||||   ||    
T  39150697 cactctttaagcactttaactagtaagattttaatgaaaatttatgtattgaatgcattgtaaattgtaatagttgactttttacaagaataattactaa 39150598  T
Q  278 atttgagatgcttaaatagtaccccggaggcactcgttaacaa 320  Q
    ||||  |||||||||| ||| |||||| |||||||||||||||    
T  39150597 atttaggatgcttaaagagtgccccgggggcactcgttaacaa 39150555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 14746164 - 14746238
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgta 225  Q
    |||||||||||||||||| || || | ||||||| ||||||||||| ||||||||| ||||||||||||| ||||    
T  14746164 ggaaaatgttaacgagtgcccccgaggcactcttcaagcactttaattagtaagttctatatgaaaagttgtgta 14746238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 38748689 - 38748794
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||||||| || | || ||||||||||||||||||| ||||||||| | ||||||||||| |||| | | || ||| |||||| |||||||||    
T  38748689 aaatgttaacgagtgcccccagg-cactctttaagcactttaattagtaagttatttatgaaaagttgtgtattgagtgcattgaaaattataatagttg 38748787  T
Q  254 aattttt 260  Q
    | |||||    
T  38748788 acttttt 38748794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 47187786 - 47187894
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatag 250  Q
    ||||||||||||||||| ||| || |||||||||||| ||||| |||| |||||||||  ||||||| ||||||| | |||| |||  ||||| ||||||    
T  47187786 ggaaaatgttaacgagtatcc-cgtgacactctttaaacacttaaaatggtaagtttttaatgaaaaattatgtattgaatgcattggaaattataatag 47187884  T
Q  251 ttgaattttt 260  Q
    |||| |||||    
T  47187885 ttgatttttt 47187894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 44829410 - 44829311
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    |||| |||||||||||   |||||||||||||||| |||||||   |||||||||| || ||||||| |||| | |||||||| ||||||||||||||||    
T  44829410 aaatattaacgagtgtttccgggacactctttaagtactttaatcggtaagtttta-ataaaaagttgtgtattgaatgtattaaaaattgtaatagttg 44829312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 34232678 - 34232725
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagt 201  Q
    ||||||||||||||| |||||| ||||||||||||||| |||||||||    
T  34232678 aaatgttaacgagtgccctcggaacactctttaagcaccttaaatagt 34232725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 42791128 - 42791215
Alignment:
Q  173 cgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    ||||||||| |||||| | |||||||||||| |||||||| ||||| | |||| | |||| ||||||||| || |||||||| |||||    
T  42791128 cgggacactttttaagtattttaaatagtaaattttatataaaaagctgtgtattgaatgcatttaaaatagtgatagttgacttttt 42791215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 3982403 - 3982298
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    |||||||||||||||||  |||  |||||||||| ||||||||||||||| |||| ||| ||||||| | || | |||| |||  ||||| |||||||||    
T  3982403 aaatgttaacgagtgtctccggtgcactctttaaacactttaaatagtaaatttt-tattaaaagttgtctattcaatgcattataaattataatagttg 3982305  T
Q  254 aattttt 260  Q
    | |||||    
T  3982304 acttttt 3982298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 32562350 - 32562426
Alignment:
Q  183 tttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    ||||| |||||||||||||||||||| ||| |||| || |||| | | || ||| |||||||||||||||||||||||    
T  32562350 tttaaacactttaaatagtaagtttt-tataaaaaattgtgtattcactgcattgaaaattgtaatagttgaattttt 32562426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 324
Target Start/End: Complemental strand, 4772030 - 4771991
Alignment:
Q  285 atgcttaaatagtaccccggaggcactcgttaacaaaacc 324  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  4772030 atgcttaaagagtgccccggaggcactcgttaacaaaacc 4771991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 188
Target Start/End: Original strand, 7549817 - 7549848
Alignment:
Q  157 tgttaacgagtgtcctcgggacactctttaag 188  Q
    ||||||||||||||||||||||||||||||||    
T  7549817 tgttaacgagtgtcctcgggacactctttaag 7549848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 14758697 - 14758635
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaa 217  Q
    |||||||||||||||  ||  |||||||||||||| |||||||||||||| |||| ||||||||    
T  14758697 aaatgttaacgagtgctctaaggacactctttaaggactttaaatagtaaatttt-tatgaaaa 14758635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 259
Target Start/End: Complemental strand, 31889306 - 31889196
Alignment:
Q  150 tggaaaatgttaacgagtgtc-ctcgggacactctttaagcactttaaatagtaagttttatatg-aaaagttatgtaataaatgtatttaaaattgtaa 247  Q
    ||||||||||||||||||||  || | | ||||||||||||| ||||||| |||||||||  ||| ||||||| |||| |||||| |||  |||| ||||    
T  31889306 tggaaaatgttaacgagtgtttctagtg-cactctttaagcattttaaatggtaagtttttaatgaaaaagttgtgtattaaatgcattagaaatcgtaa 31889208  T
Q  248 tagttgaatttt 259  Q
    ||||||| ||||    
T  31889207 tagttgactttt 31889196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 36321593 - 36321644
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagt 205  Q
    ||||||||||||||||||| ||| ||||||||||| ||| ||||||| ||||    
T  36321593 aaatgttaacgagtgtccttggggcactctttaaggactataaatagcaagt 36321644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 7212906 - 7212841
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagtt 220  Q
    ||||||||| |||||| || | |||||||||||| |||||||||| |||||||||| || |||||||    
T  7212906 aaatgttaatgagtgttct-gagacactctttaaacactttaaattgtaagttttaaataaaaagtt 7212841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 44329735 - 44329629
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 253  Q
    ||||||||||||||||   |  |||| ||||||| |||||||||||| |||||||   | |||| ||||||| | |||| ||| |||||| |||||||||    
T  44329735 aaatgttaacgagtgtttccacgacattctttaaacactttaaatagaaagtttttagtaaaaaattatgtattgaatgcattgaaaattataatagttg 44329636  T
Q  254 aattttt 260  Q
    | |||||    
T  44329635 acttttt 44329629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 260
Target Start/End: Complemental strand, 44329581 - 44329497
Alignment:
Q  176 gacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    ||||||||||||||||||||||||  || ||||  || ||||||||| || |||||| | | |||||| ||||| |||| |||||    
T  44329581 gacactctttaagcactttaaatataaaatttttaataaaaagttatatattaaatgcactgaaaattataataattgacttttt 44329497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 153 - 260
Target Start/End: Complemental strand, 7421812 - 7421705
Alignment:
Q  153 aaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagt-aagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagt 251  Q
    ||||||||||||||||| |  | |||||||||||||||||||||||||| ||||||||| | ||||||| |||| |||||| ||| |||||||||||| |    
T  7421812 aaaatgttaacgagtgttcctgtgacactctttaagcactttaaatagtaaagttttat-taaaaagttgtgtattaaatgcattgaaaattgtaatatt 7421714  T
Q  252 tgaattttt 260  Q
    ||| |||||    
T  7421713 tgacttttt 7421705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 187 - 320
Target Start/End: Complemental strand, 3766383 - 3766253
Alignment:
Q  187 agcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttttnnnnnnntaattttaaaatttgagat 286  Q
    ||||||||||||  ||||||||||||||||||||||||||| ||||||||  ||||||||||| |||| |||||       ||||||  ||||||| |||    
T  3766383 agcactttaaatgataagttttatatgaaaagttatgtaatgaatgtattataaattgtaataattgactttttaaaagaataatttccaaatttgggat 3766284  T
Q  287 gcttaaatagtaccccggaggcactcgttaacaa 320  Q
    ||||||| ||| ||   | |||||||||||||||    
T  3766283 gcttaaagagtgcc---ggggcactcgttaacaa 3766253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 260
Target Start/End: Original strand, 17215646 - 17215756
Alignment:
Q  150 tggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 249  Q
    ||||||||||||||||||| | ||||  ||||||||||||||||||||| |||||||||  || |||| || | || | |||| ||| ||||||||||||    
T  17215646 tggaaaatgttaacgagtgccttcggatcactctttaagcactttaaatggtaagtttttaataaaaaattgtttattgaatgcattgaaaattgtaata 17215745  T
Q  250 gttgaattttt 260  Q
    ||||| |||||    
T  17215746 gttgacttttt 17215756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 252
Target Start/End: Complemental strand, 23399249 - 23399151
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 252  Q
    |||||||||||||||||  ||  |||||||||||| |||||||||| |||||||||||| |||||||||| ||  |||  ||| |||||| ||||||||    
T  23399249 aaatgttaacgagtgtctccgaaacactctttaagtactttaaatattaagttttatattaaaagttatgcaacgaatacattgaaaattataatagtt 23399151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 151 - 249
Target Start/End: Complemental strand, 30801883 - 30801785
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 249  Q
    |||||||||||||||||  || ||||||| |||||||||||||||||||| |||||||  || ||||||| |||| | |||| ||| |||||| |||||    
T  30801883 ggaaaatgttaacgagtacccccgggacattctttaagcactttaaatagcaagtttttaattaaaagttgtgtattgaatgcattgaaaattataata 30801785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 259
Target Start/End: Complemental strand, 32823816 - 32823711
Alignment:
Q  154 aaatgttaacgagtgtcctcggga-cactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 252  Q
    ||||||||||||||| |||| ||| ||||||||||||||||||||||  |||||||  |||||||||| |||| | |||| ||| |||||||||||| ||    
T  32823816 aaatgttaacgagtg-cctccggagcactctttaagcactttaaataacaagtttttaatgaaaagttgtgtattgaatgcattgaaaattgtaataatt 32823718  T
Q  253 gaatttt 259  Q
    || ||||    
T  32823717 gactttt 32823711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 172 - 260
Target Start/End: Complemental strand, 31855175 - 31855087
Alignment:
Q  172 tcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    |||||| ||||||||||||||||||||||||||||||  ||||||| || | || | |||| |||  |||||||||||||||| |||||    
T  31855175 tcgggatactctttaagcactttaaatagtaagtttttaatgaaaaattgtatattgaatgcattggaaattgtaatagttgacttttt 31855087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 19293420 - 19293486
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagtt 220  Q
    ||||||||| |||||||||||||   ||||||||||||||||| ||||| ||||| |||||||||||    
T  19293420 aaatgttaatgagtgtcctcggggatctctttaagcactttaattagtaggttttttatgaaaagtt 19293486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 252
Target Start/End: Complemental strand, 2865016 - 2864917
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttat-atgaaaagttatgtaataaatgtatttaaaattgtaatagtt 252  Q
    |||||||||| |||| || || |||||||||||| || ||||||| ||||||||| | ||||||| || |||| | |||| |||  ||||||||||||||    
T  2865016 aaatgttaactagtgcccccgagacactctttaaacattttaaatggtaagttttttgatgaaaaattgtgtatttaatgcattgtaaattgtaatagtt 2864917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 4806471 - 4806563
Alignment:
Q  154 aaatgttaacgagtgtcct-cgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaa 247  Q
    |||||||||||||| |||| |||||||||||||||| ||  | ||||||||||||| ||||||||  | |||||| |||||||| ||| ||||||    
T  4806471 aaatgttaacgagt-tcctccgggacactctttaagaaccattaatagtaagtttt-tatgaaaatatgtgtaatcaatgtattgaaatttgtaa 4806563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 13063849 - 13063930
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatt 236  Q
    ||||||| ||||||||| ||| ||||||||||||| ||| |||||||||| | || ||||||||  | |||||| ||||||||    
T  13063849 aaatgttcacgagtgtcttcgagacactctttaaggactataaatagtaactatt-tatgaaaaagtgtgtaatcaatgtatt 13063930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 7465622 - 7465581
Alignment:
Q  147 tgttggaaaatgttaacgagtgtcctcgggacactctttaag 188  Q
    |||||| |||||||||||||||||  ||||||||||||||||    
T  7465622 tgttgggaaatgttaacgagtgtctccgggacactctttaag 7465581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 3605148 - 3605116
Alignment:
Q  157 tgttaacgagtgtcctcgggacactctttaagc 189  Q
    |||||||||||||| ||||||||||||||||||    
T  3605148 tgttaacgagtgtcatcgggacactctttaagc 3605116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 20216 - 20313
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 252  Q
    ||||||||||||||| | ||  |||||||||||||||||||||||  |||||||| ||||||||||| |||| | |||| |||| ||||||||||||||    
T  20216 aaatgttaacgagtgccttcatgacactctttaagcactttaaatgataagtttt-tatgaaaagttgtgtatttaatgcatttgaaattgtaatagtt 20313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 25193 - 25111
Alignment:
Q  179 actctttaagcactttaaatagtaag-ttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 260  Q
    |||||||||||| ||||||||||||| |||| ||| |||| ||  ||||| |||| ||| ||||||||||||||||| |||||    
T  25193 actctttaagcattttaaatagtaagtttttttataaaaaattgagtaatcaatgcattgaaaattgtaatagttgatttttt 25111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1444 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 881 - 938
Alignment:
Q  151 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagtttt 208  Q
    ||||||||||||||||||||  |||| |||||||||| ||||  |||| |||||||||    
T  881 ggaaaatgttaacgagtgtctccggggcactctttaaacactaaaaatggtaagtttt 938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 190
Target Start/End: Original strand, 4926 - 4962
Alignment:
Q  154 aaatgttaacgagtgtcctcgggacactctttaagca 190  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  4926 aaatgttaacgagtgtcctcggggcacgctttaagca 4962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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