View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2949_low_5 (Length: 450)
Name: NF2949_low_5
Description: NF2949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2949_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 3 - 405
Target Start/End: Original strand, 30744892 - 30745302
Alignment:
| Q |
3 |
cagaaacatcaagtaaacgtaaaatgcaggacagagaaaaactaaagtcgaaagagccaattttggaatttcggaataacaagtttgtgaattgagtaag |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30744892 |
cagaaacatcaagtaaacgtaaaatgcaggacaga--aaaactaaagtcgaaagagccaattttggaatttcggaataacaagtttgtgaattgagtaag |
30744989 |
T |
|
| Q |
103 |
ttaaacttagtttatccatctcaattatagataatttaaccgataagatctcatgagcttaaagctaattgaaattgg-acttaaattcatgcaaaagta |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30744990 |
ttaaacttagtttatccatctcaattatagatactttaaccgataagatctcatgagcttaaagctaattgaaattggaacttaaattcatgcaaaagta |
30745089 |
T |
|
| Q |
202 |
cagcagcaacagtaaaatcatacataaattagcagttaacagc----------tatatatataaatataaatgttcactgagagaatcattcattcatat |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30745090 |
cagcagcaacagtaaaatcatacataaattagcagttaacagctatatatatatatatatataaatataaatgttcactgagagaatcattcattcatat |
30745189 |
T |
|
| Q |
292 |
tagacgtatatgatggaagggtaaaaacagagttaacccagtttccatgcagtaaatccaaaatttgatcctgatcagttctccaataacggaatcaatg |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30745190 |
tagacgtatatgatggaagggtaaaaacagagttaacccagtttccatgcagtaaatccaaaatttgatcctgatcagttctccaataac-aaatcaatg |
30745288 |
T |
|
| Q |
392 |
agttcaacttggtc |
405 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30745289 |
agttcaacttggtc |
30745302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 444
Target Start/End: Original strand, 30745336 - 30745367
Alignment:
| Q |
413 |
taaaagaaagtgaaacctagcagaagaataat |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
30745336 |
taaaagaaagtgaaacctagcagaagaataat |
30745367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University