View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2949_low_7 (Length: 387)
Name: NF2949_low_7
Description: NF2949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2949_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 25651564 - 25651733
Alignment:
| Q |
16 |
catatgttcacttcctttggaggcattggccattatgacagagcttgagttaaaaaacatggagaaaattaagacccggttagcaaacttgattatggag |
115 |
Q |
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| T |
25651564 |
catatgttcacttcctttggaggcattggccattatgacagagcttgagtgaaaaaacatggagaaaattaagacccggttagcaaacttgattatggag |
25651663 |
T |
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| Q |
116 |
gagtttttatgagtttcgataaatgaattttttatgagttaaatttataatcagttatctaaacttcctt |
185 |
Q |
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| T |
25651664 |
gagtttttatgagtttcgataaatgaattttttatgagttaaatttataatcagttatctaaacttcctt |
25651733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 285 - 379
Target Start/End: Original strand, 25651831 - 25651925
Alignment:
| Q |
285 |
gcggaacaaatccgatgaatagatattgattaaatcaataatcacaaatcaaaacatatatttaaacaccttaatgaatttcatatgttcatctc |
379 |
Q |
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| T |
25651831 |
gcggaacaaatccgatgaatagatattgattaaatcaataatcacaaatcaaaatatatatttaaacaccttaatggatttcatatgtttatctc |
25651925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 25662322 - 25662278
Alignment:
| Q |
296 |
ccgatgaatagatattgattaaatcaataatcacaaatcaaaaca |
340 |
Q |
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| T |
25662322 |
ccgatgaacggatattgattaaatcattaatcacaaatcaaaaca |
25662278 |
T |
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