View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2949_low_8 (Length: 377)
Name: NF2949_low_8
Description: NF2949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2949_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 359
Target Start/End: Original strand, 39280909 - 39281257
Alignment:
| Q |
11 |
cagagaaatgtttgggattgattgaacaaatgtttggtgaagaaatttttcctagtatcaactcttgtaatattctgatcaattccttctgtaggactgg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39280909 |
cagagaaatgtttgggattgattgaacaaatgtttggtgaagaaatttttcctagtattaactcttgtaatattctgatcaattccttctgtaggactgg |
39281008 |
T |
|
| Q |
111 |
aaaagtaaatgacgctcttcaatttcttcgggatatgattcagcgtggtctgacaccagatatagtcacttataacagcttgatcaatggtctttgcaag |
210 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39281009 |
aaaagtaaatgacgctcttcagtttcttcgggatatgattcagcgtggtctgacaccagatatagtcacttataacagcctgatcaatggtctttgcaag |
39281108 |
T |
|
| Q |
211 |
atgggccgtttgcaggaggctttgaacctttttaatgggctacaagccaaaggaattcaccctgatgctgttacgtataacacattaatcagtaggtact |
310 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39281109 |
atgggccgttttcaggaggctttgaacctttttaacgggctacaagccaaaggaattcaccctgatgctgttacgtataacacattgatcagtaggtact |
39281208 |
T |
|
| Q |
311 |
gctacgagggtttgtttaatgacgcatgtcagcttttattcaaaggtgt |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39281209 |
gctacgagggtttgtttaatgacgcatgtcagcttttattcaaaggtgt |
39281257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 360
Target Start/End: Complemental strand, 17349294 - 17348946
Alignment:
| Q |
12 |
agagaaatgtttgggattgattgaacaaatgtttggtgaagaaatttttcctagtatcaactcttgtaatattctgatcaattccttctgtaggactgga |
111 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||| ||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||| | |||| |
|
|
| T |
17349294 |
agagaaaggtttgggattgattgaggaaatgtttgggaaagggatttttcctagtattaactcttgtaacattctgagcaattccttctgtagtattgga |
17349195 |
T |
|
| Q |
112 |
aaagtaaatgacgctcttcaatttcttcgggatatgattcagcgtggtctgacaccagatatagtcacttataacagcttgatcaatggtctttgcaaga |
211 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| || |||||| |||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
17349194 |
aaagtaaatgacgctcttcggtttcttcgagatatgatccatcgtggtttgacaccagatatagtcacttataacagcttgattaatggtctttgcaaaa |
17349095 |
T |
|
| Q |
212 |
tgggccgtttgcaggaggctttgaacctttttaatgggctacaagccaaaggaattcaccctgatgctgttacgtataacacattaatcagtaggtactg |
311 |
Q |
| |
|
|| ||| | ||||||||||||||||||||||| |||||||| || ||||||| |||| |||||||||||||||||||||| |||||||| | ||| |
|
|
| T |
17349094 |
atggtcgtattcaggaggctttgaacctttttaacaggctacaaaccgaaggaatgtgccctaatgctgttacgtataacacattgatcagtagcttctg |
17348995 |
T |
|
| Q |
312 |
ctacgagggtttgtttaatgacgcatgtcagcttttattcaaaggtgtt |
360 |
Q |
| |
|
||| |||| |||||||||||| || |||| ||||||||||||||||||| |
|
|
| T |
17348994 |
ctatgaggatttgtttaatgatgcgtgtctgcttttattcaaaggtgtt |
17348946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University