View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2949_low_9 (Length: 371)
Name: NF2949_low_9
Description: NF2949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2949_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 353
Target Start/End: Original strand, 32833239 - 32833581
Alignment:
| Q |
11 |
catcatcatacatcataaaagccactttttaattatctttaaataaaagccactacttaataatgtttaaaattgttatcctgacagatatgcataaatt |
110 |
Q |
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| T |
32833239 |
catcatcatacatcataaaagccactttttaattatctttaaataaaagccactacttaataatgtttaaaattgttatcctgacagatatgcataaatt |
32833338 |
T |
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| Q |
111 |
taagaataaccgtcactaaaatttcaagcacaagttcatatcccataacataatccaatatatcaaatggaaacttacatcaagtgaacattacaaacat |
210 |
Q |
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| T |
32833339 |
taagaataaccgtcactaaaatttcaagcacaagttcatatcccataacataatccaatatatcaaatggaaacttacatcaagcgaacattacaaacat |
32833438 |
T |
|
| Q |
211 |
aaagtaaagtatatatattatgctgaattaatattttcccccactcatttataagtttatcagcataaagtaagatgcaattaagcattgaagataatta |
310 |
Q |
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| T |
32833439 |
aaagtaaagtatatatattatgctgaattaatattttaccccactcatttataagtttatcagcataaagtaagatgcaattaagcatttaagataatta |
32833538 |
T |
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| Q |
311 |
gattaacaagcttgattaagggtgagttagtatagtgtcaacc |
353 |
Q |
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| T |
32833539 |
gattaacaagcttgattaagggtgagttagtatagtgtcaacc |
32833581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 229 - 353
Target Start/End: Original strand, 32839879 - 32840003
Alignment:
| Q |
229 |
tatgctgaattaatattttcccccactcatttataagtttatcagcataaagtaagatgcaattaagcattgaagataattagattaacaagcttgatta |
328 |
Q |
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| T |
32839879 |
tatgctgaattaatatttttccccactcatttataagtttaccagcataaagtaagatgcaattaaacattgaagagaattagattaacaagcttgatta |
32839978 |
T |
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| Q |
329 |
agggtgagttagtatagtgtcaacc |
353 |
Q |
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|| |||||||||||||||||||||| |
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| T |
32839979 |
agtgtgagttagtatagtgtcaacc |
32840003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 32839780 - 32839845
Alignment:
| Q |
157 |
aacataatccaatatatcaaatggaaacttacatcaagtgaacattacaaacataaagtaaagtat |
222 |
Q |
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|||||||||||||| || ||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
32839780 |
aacataatccaataaatgaaatggaaacttaaatcaagtgaacattacaaacataatgtaaagtat |
32839845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 295
Target Start/End: Original strand, 29605042 - 29605080
Alignment:
| Q |
257 |
atttataagtttatcagcataaagtaagatgcaattaag |
295 |
Q |
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| T |
29605042 |
atttatatgtttatcagcacaaagtaagatgcaattaag |
29605080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 19961187 - 19961148
Alignment:
| Q |
256 |
catttataagtttatcagcataaagtaagatgcaattaag |
295 |
Q |
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| T |
19961187 |
catttataagtttatcagcacaaagtaagatgcagttaag |
19961148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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