View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2950_high_1 (Length: 940)

Name: NF2950_high_1
Description: NF2950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2950_high_1
NF2950_high_1
[»] chr4 (19 HSPs)
chr4 (531-701)||(9601715-9601880)
chr4 (716-843)||(9605370-9605495)
chr4 (182-281)||(9570090-9570189)
chr4 (290-417)||(9601970-9602094)
chr4 (822-910)||(9580693-9580781)
chr4 (822-910)||(9586388-9586476)
chr4 (653-717)||(9574396-9574460)
chr4 (290-392)||(9581063-9581162)
chr4 (290-392)||(9586758-9586857)
chr4 (217-281)||(37895976-37896040)
chr4 (19-111)||(9593242-9593332)
chr4 (354-390)||(9593148-9593184)
chr4 (63-110)||(9569950-9569997)
chr4 (644-708)||(9592954-9593018)
chr4 (420-473)||(9581000-9581051)
chr4 (219-281)||(9581383-9581444)
chr4 (420-473)||(9586695-9586746)
chr4 (219-281)||(9587078-9587139)
chr4 (760-802)||(9592445-9592487)
[»] chr6 (4 HSPs)
chr6 (716-802)||(29142179-29142265)
chr6 (207-280)||(29145698-29145771)
chr6 (822-891)||(30036297-30036366)
chr6 (822-891)||(30152033-30152102)
[»] scaffold0110 (1 HSPs)
scaffold0110 (823-891)||(41406-41474)
[»] chr7 (1 HSPs)
chr7 (207-281)||(42446739-42446813)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 9e-51; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 531 - 701
Target Start/End: Complemental strand, 9601880 - 9601715
Alignment:
Q  531 attcaaatttccatacaagtatctgtttgctgcctcttctcattcgcaaatatcatctcccatctactgccaccatgatactgctatccccacaaactgt 630  Q
    |||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||| |||||||||  |  ||||||||||||||    
T  9601880 attcaaatctccatacaagtatctgtttgctgcctcctctcattcacaaatatcatctcccatctaccgccgccatgataccacagtccccacaaactgt 9601781  T
Q  631 tgttagatgaaacgagtattacttcttatttacgttgtagttgctttaccgagttgcctgattcataaact 701  Q
    ||||||||     ||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||    
T  9601780 tgttagat-----gagtattacttcttatttacgttgtagtttctttaccaagttgcttgattcataaact 9601715  T

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Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 716 - 843
Target Start/End: Complemental strand, 9605495 - 9605370
Alignment:
Q  716 ccatcataacagcttaattagcattggataataaagtaagattgaataggtattaactataacggaccttcttgattgttaaataatccatatacatgat 815  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||  |||||||||    
T  9605495 ccatcataacagcttaattagcattggataataaagtaagattgaataggtattaactataatgaaccttcttgattgttaaataatcc--atacatgat 9605398  T
Q  816 catccgttatcattaacaatatcaatgg 843  Q
    ||||  ||||||||||||||||||||||    
T  9605397 catctcttatcattaacaatatcaatgg 9605370  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 9570090 - 9570189
Alignment:
Q  182 tagtcgagagtcccttttggttgtattgctttacaaattttattttgaatgtttaatctatttcgatttgcaaacttatctgatttccatatcaatgaaa 281  Q
    |||||||||| |||||||||||||||||||||   |||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||    
T  9570090 tagtcgagagacccttttggttgtattgctttgtcaattttattttgaatgtttaatctgtttccatttgcaaacttatctgatttcaatatcaatgaaa 9570189  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 290 - 417
Target Start/End: Complemental strand, 9602094 - 9601970
Alignment:
Q  290 ttttgagttcaatattgatttttgtcatgtgaaataatatcatggttattacacggtctcgaactggatggccattaatgtagcttgaacaatctacttc 389  Q
    ||||||||||||| |||||||||||| |||||||||   || | ||||||||  ||||| || ||| | | |||||||||||||||||||||| ||||||    
T  9602094 ttttgagttcaattttgatttttgtcgtgtgaaata---tcgtagttattacgaggtcttgatctgaacgaccattaatgtagcttgaacaatatacttc 9601998  T
Q  390 accagccttttaatgttccttattatac 417  Q
    |||||||||||||||||| |||||||||    
T  9601997 accagccttttaatgttctttattatac 9601970  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 822 - 910
Target Start/End: Complemental strand, 9580781 - 9580693
Alignment:
Q  822 ttatcattaacaatatcaatgggattcacttcatttcagtt-tctttctctatgcaaattgcaatcagcttaccttgtttagaagcctta 910  Q
    ||||||||||||| |||||| ||||||||||||  |||||| ||||| | | ||||||||||||||||||||||||||||||||||||||    
T  9580781 ttatcattaacaacatcaattggattcacttcaactcagttatcttttt-tctgcaaattgcaatcagcttaccttgtttagaagcctta 9580693  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 822 - 910
Target Start/End: Complemental strand, 9586476 - 9586388
Alignment:
Q  822 ttatcattaacaatatcaatgggattcacttcatttcagtt-tctttctctatgcaaattgcaatcagcttaccttgtttagaagcctta 910  Q
    ||||||||||||| |||||| ||||||||||||  |||||| ||||| | | ||||||||||||||||||||||||||||||||||||||    
T  9586476 ttatcattaacaacatcaattggattcacttcaactcagttatcttttt-tctgcaaattgcaatcagcttaccttgtttagaagcctta 9586388  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 653 - 717
Target Start/End: Original strand, 9574396 - 9574460
Alignment:
Q  653 ttcttatttacgttgtagttgctttaccgagttgcctgattcataaactgaatttgtacttgtcc 717  Q
    |||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||||||||    
T  9574396 ttcttatttatgttgtggtttctttaccgagttgcttgattcataaactgaatttgtacttgtcc 9574460  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 290 - 392
Target Start/End: Complemental strand, 9581162 - 9581063
Alignment:
Q  290 ttttgagttcaatattgatttttgtcatgtgaaataatatcatggttattacacggtctcgaactggatggccattaatgtagcttgaacaatctacttc 389  Q
    |||||||||||||  ||||||||||  |||||||||   |||| |||||||    |||| ||||||||||||||||||||||||||||| ||||||||||    
T  9581162 ttttgagttcaattctgatttttgttgtgtgaaata---tcatcgttattatgacgtcttgaactggatggccattaatgtagcttgaataatctacttc 9581066  T

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Target: chr4; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 290 - 392
Target Start/End: Complemental strand, 9586857 - 9586758
Alignment:
Q  290 ttttgagttcaatattgatttttgtcatgtgaaataatatcatggttattacacggtctcgaactggatggccattaatgtagcttgaacaatctacttc 389  Q
    |||||||||||||  ||||||||||  |||||||||   |||| |||||||    |||| ||||||||||||||||||||||||||||| ||||||||||    
T  9586857 ttttgagttcaattctgatttttgttgtgtgaaata---tcatcgttattatgacgtcttgaactggatggccattaatgtagcttgaataatctacttc 9586761  T

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Target: chr4; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 37895976 - 37896040
Alignment:
Q  217 aattttattttgaatgtttaatctatttcgatttgcaaacttatctgatttccatatcaatgaaa 281  Q
    |||||||||||||||||||| ||| ||||  ||||| ||||||||||||||||||||||||||||    
T  37895976 aattttattttgaatgtttagtctctttctttttgcgaacttatctgatttccatatcaatgaaa 37896040  T

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Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 9593332 - 9593242
Alignment:
Q  19 tgttttgtgcgttttcctcgcgtggcctatcaaggtttgctgtagtcgtgttttcttctg-tttgattggtggaggcagttggagtatttgctg 111  Q
    |||||||||||  |||||||  ||||||||||||||||| || |||||||||||| |||| ||||||| |||||||||| ||||||||||||||    
T  9593332 tgttttgtgcggcttcctcg--tggcctatcaaggtttggtgcagtcgtgttttc-tctgttttgatttgtggaggcagctggagtatttgctg 9593242  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 9593184 - 9593148
Alignment:
Q  354 tggatggccattaatgtagcttgaacaatctacttca 390  Q
    |||||||||||||||||||||||||||||||||||||    
T  9593184 tggatggccattaatgtagcttgaacaatctacttca 9593148  T

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Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 9569950 - 9569997
Alignment:
Q  63 gtcgtgttttcttctgtttgattggtggaggcagttggagtatttgct 110  Q
    |||||||||||||||||||||||||||||  ||||| |||||||||||    
T  9569950 gtcgtgttttcttctgtttgattggtggatacagttagagtatttgct 9569997  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 644 - 708
Target Start/End: Complemental strand, 9593018 - 9592954
Alignment:
Q  644 gagtattacttcttatttacgttgtagttgctttaccgagttgcctgattcataaactgaatttg 708  Q
    |||||||||||||||||||  |||| ||| |||||| ||||||| |||||| || ||||||||||    
T  9593018 gagtattacttcttatttatattgtggtttctttacggagttgcttgattcgtagactgaatttg 9592954  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 420 - 473
Target Start/End: Complemental strand, 9581051 - 9581000
Alignment:
Q  420 tctaacgagtttttggtgttatgtctgcaaccttcctataataagcataagtgt 473  Q
    |||||||||||||||||  |||||||  ||||||| ||||||||||||||||||    
T  9581051 tctaacgagtttttggt--tatgtctaaaaccttcttataataagcataagtgt 9581000  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 9581444 - 9581383
Alignment:
Q  219 ttttattttgaatgtttaatctatttcgatttgcaaacttatctgatttccatatcaatgaaa 281  Q
    |||||||||||||||||| ||| |||| |||||| ||||| | |||||||||||||| |||||    
T  9581444 ttttattttgaatgtttagtctctttctatttgcgaactt-tttgatttccatatcattgaaa 9581383  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 420 - 473
Target Start/End: Complemental strand, 9586746 - 9586695
Alignment:
Q  420 tctaacgagtttttggtgttatgtctgcaaccttcctataataagcataagtgt 473  Q
    |||||||||||||||||  |||||||  ||||||| ||||||||||||||||||    
T  9586746 tctaacgagtttttggt--tatgtctaaaaccttcttataataagcataagtgt 9586695  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 9587139 - 9587078
Alignment:
Q  219 ttttattttgaatgtttaatctatttcgatttgcaaacttatctgatttccatatcaatgaaa 281  Q
    |||||||||||||||||| ||| |||| |||||| ||||| | |||||||||||||| |||||    
T  9587139 ttttattttgaatgtttagtctctttctatttgcgaactt-tttgatttccatatcattgaaa 9587078  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 760 - 802
Target Start/End: Complemental strand, 9592487 - 9592445
Alignment:
Q  760 aataggtattaactataacggaccttcttgattgttaaataat 802  Q
    ||||||||| |||||||| |||| |||||||||||||||||||    
T  9592487 aataggtataaactataatggactttcttgattgttaaataat 9592445  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 716 - 802
Target Start/End: Original strand, 29142179 - 29142265
Alignment:
Q  716 ccatcataacagcttaattagcattggataataaagtaagattgaataggtattaactataacggaccttcttgattgttaaataat 802  Q
    ||||||||||||||||||| |||||||||||||| ||||||| ||||| | || ||| |||| | | |||| |||||||||||||||    
T  29142179 ccatcataacagcttaatttgcattggataataatgtaagatagaataagcataaacaataatgcagcttcatgattgttaaataat 29142265  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 280
Target Start/End: Original strand, 29145698 - 29145771
Alignment:
Q  207 ttgctttacaaattttattttgaatgtttaatctatttcgatttgcaaacttatctgatttccatatcaatgaa 280  Q
    ||||||||  |||||||||||||||||||  ||| |||| |||| |||||| || |||||||||||||| ||||    
T  29145698 ttgctttatcaattttattttgaatgttttttctctttccatttacaaactgatttgatttccatatcattgaa 29145771  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 822 - 891
Target Start/End: Complemental strand, 30036366 - 30036297
Alignment:
Q  822 ttatcattaacaatatcaatgggattcacttcatttcagtttctttctctatgcaaattgcaatcagctt 891  Q
    |||||||||| || | |||| ||||||| || | ||||| || ||||||| |||||||||||||||||||    
T  30036366 ttatcattaagaacaccaattggattcagtttaattcaggttatttctctgtgcaaattgcaatcagctt 30036297  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 822 - 891
Target Start/End: Complemental strand, 30152102 - 30152033
Alignment:
Q  822 ttatcattaacaatatcaatgggattcacttcatttcagtttctttctctatgcaaattgcaatcagctt 891  Q
    |||||||||| || | |||| ||||||| || | ||||| || ||||||| |||||||||||||||||||    
T  30152102 ttatcattaagaacaccaattggattcagtttaattcaggttatttctctgtgcaaattgcaatcagctt 30152033  T

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Target: scaffold0110 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 823 - 891
Target Start/End: Original strand, 41406 - 41474
Alignment:
Q  823 tatcattaacaatatcaatgggattcacttcatttcagtttctttctctatgcaaattgcaatcagctt 891  Q
    |||||||||||| | |||| |||||||||||| ||||| || ||||||| |||||||||||||||||||    
T  41406 tatcattaacaacaccaattggattcacttcacttcaggttatttctctgtgcaaattgcaatcagctt 41474  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 42446739 - 42446813
Alignment:
Q  207 ttgctttacaaattttattttgaatgtttaatctatttcgatttgcaaacttatctgatttccatatcaatgaaa 281  Q
    ||||||||  ||||||| || ||||||||| ||| |||  ||||||||||  |||||||||| ||||||||||||    
T  42446739 ttgctttatgaattttacttcgaatgtttagtctcttttcatttgcaaacgaatctgatttctatatcaatgaaa 42446813  T

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