View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2950_high_4 (Length: 562)
Name: NF2950_high_4
Description: NF2950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2950_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 7 - 562
Target Start/End: Original strand, 46642756 - 46643311
Alignment:
| Q |
7 |
gacatcatcaacaaccaattctcaggaacatttccggaggttgttctttgcattccttcattaaaatacttagacataagatacaacaattttcaaggaa |
106 |
Q |
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| T |
46642756 |
gacatcagtaacaaccaattctcaggaacattcccggaggttgttctttgcattccttcattaaaatacttggacataagatacaacaattttcaaggaa |
46642855 |
T |
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| Q |
107 |
atgttcctaaaggcctctttgatctcaaacttgatgcacttttcatcaacaacaacaaattcaaattttctttaccagaaaatttcggaaagatgccagc |
206 |
Q |
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| T |
46642856 |
atgttcctaaaggcctctttgatctcaaacttgatgcacttttcatcaacaacaacaaattcaaattttctttaccagaaaatttcggaaagatgccagc |
46642955 |
T |
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| Q |
207 |
ttctgttgttgtgttcgcgaacaatgatatacaaggttgtattccatcgagtgtagcgaatatgaaggatacaatcaatgagataattatgacgaacagc |
306 |
Q |
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| T |
46642956 |
ttctgttgttgtgttcgcgaacaatgatatacaaggttgtattccatcgagtgtagcgaatatgaaagatacaatcaacgagataattatgacgaacagc |
46643055 |
T |
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| Q |
307 |
aaaatgaaaggctgtttacctaatgatataggaaaattggataaagtgacagtgtttgatgttagttttaatgagtttgttggtgaattgcctgaaagta |
406 |
Q |
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| T |
46643056 |
agaatgaaaggctgtttacctaatgatataggaaaattggataaagtgacagtgtttgatgttagttttaatgagtttgttggtgaattgcctgaaagta |
46643155 |
T |
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| Q |
407 |
tcagtggaatgaaaagtttggagcagttgaatgtggcacataataaattttctggtgttattcctgagagtatatgtagattgccaaggttggagaattt |
506 |
Q |
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| T |
46643156 |
tcagtggaatgaaaagtttggagcagttgaatgtggcacataataaattttctggtgttattcctgagagtatatgtagattgccaaggttgaagaattt |
46643255 |
T |
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| Q |
507 |
gacgtattcgtataattactttagtggtgaatcagagatttgtgttaagttggatg |
562 |
Q |
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| T |
46643256 |
aacgtattcgtataattacctgagtggtgaatcagagatttgtgttaagttggatg |
46643311 |
T |
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