View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2950_high_5 (Length: 384)

Name: NF2950_high_5
Description: NF2950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2950_high_5
NF2950_high_5
[»] chr1 (8 HSPs)
chr1 (22-115)||(43842450-43842541)
chr1 (135-212)||(52652803-52652880)
chr1 (292-340)||(43842233-43842281)
chr1 (292-340)||(43842013-43842061)
chr1 (141-181)||(43842384-43842424)
chr1 (135-180)||(5851713-5851758)
chr1 (157-212)||(5609983-5610039)
chr1 (135-210)||(43810925-43811001)
[»] chr3 (2 HSPs)
chr3 (135-212)||(16973079-16973157)
chr3 (149-212)||(34145718-34145782)
[»] scaffold0031 (1 HSPs)
scaffold0031 (136-214)||(77336-77415)
[»] chr5 (4 HSPs)
chr5 (138-213)||(10161373-10161448)
chr5 (69-107)||(33584541-33584579)
chr5 (69-114)||(10161304-10161349)
chr5 (136-212)||(26916890-26916966)
[»] chr7 (4 HSPs)
chr7 (135-212)||(32651957-32652035)
chr7 (157-212)||(38198320-38198377)
chr7 (69-114)||(32651891-32651936)
chr7 (140-181)||(7174210-7174251)
[»] chr8 (4 HSPs)
chr8 (136-212)||(14847551-14847627)
chr8 (135-182)||(35063689-35063736)
chr8 (69-114)||(34422894-34422939)
chr8 (69-109)||(5493289-5493329)
[»] chr4 (4 HSPs)
chr4 (135-170)||(31484-31519)
chr4 (135-212)||(38380244-38380322)
chr4 (69-109)||(2321873-2321913)
chr4 (135-207)||(33632793-33632865)


Alignment Details
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 43842541 - 43842450
Alignment:
Q  22 tagtatatgataatgatattttagggtcttgttaactaatgtc-gcaatagttaaggaagcaagaaaagaaatatttgcattgaaaacaccattc 115  Q
    ||||||||||||||   ||||||||||||||||||||| | || ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43842541 tagtatatgataat---attttagggtcttgttaactagtatccgcactagttaaggaagcaagaaaagaaatatttgcattgaaaacaccattc 43842450  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 52652880 - 52652803
Alignment:
Q  135 gactacacaagttccaagatatttatactatatttgatttccttaaccggtgtccaggggcactagttaacattttcc 212  Q
    ||||||||||||||||||||| || ||||||||||| ||||||||||  ||| || ||||||||||||||||||||||    
T  52652880 gactacacaagttccaagatacttgtactatatttggtttccttaactagtgccccggggcactagttaacattttcc 52652803  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 43842281 - 43842233
Alignment:
Q  292 tgtagaaaggagtcaccgtcattaagaatgaaatcaagttttgctaaaa 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43842281 tgtagaaaggagtcaccgtcattaagaatgaaatcaagttttgctaaaa 43842233  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 43842061 - 43842013
Alignment:
Q  292 tgtagaaaggagtcaccgtcattaagaatgaaatcaagttttgctaaaa 340  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  43842061 tgtagaaaggaatcaacgtcattaagaatgaaatcaagttttgctaaaa 43842013  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 43842424 - 43842384
Alignment:
Q  141 acaagttccaagatatttatactatatttgatttccttaac 181  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  43842424 acaagttccaagatacttatattatatttgatttccttaac 43842384  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 5851758 - 5851713
Alignment:
Q  135 gactacacaagttccaagatatttatactatatttgatttccttaa 180  Q
    |||| ||||||||| || ||| ||||||||||||||||||||||||    
T  5851758 gactgcacaagttctaaaatacttatactatatttgatttccttaa 5851713  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 5609983 - 5610039
Alignment:
Q  157 ttatactatatttgatttccttaaccggtg-tccaggggcactagttaacattttcc 212  Q
    |||||||||||||| ||| ||||||  ||| ||| ||||||||||||||||||||||    
T  5609983 ttatactatatttggttttcttaacaagtgctcctggggcactagttaacattttcc 5610039  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 43810925 - 43811001
Alignment:
Q  135 gactacacaagttccaagatatttatactatatttgatttccttaaccggtg-tccaggggcactagttaacatttt 210  Q
    |||||||||||||  |||||| | |||||||||||| ||| ||||||  |||  ||||||||||| |||||||||||    
T  43810925 gactacacaagttttaagatactcatactatatttggttttcttaacgagtgccccaggggcactggttaacatttt 43811001  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 16973079 - 16973157
Alignment:
Q  135 gactacacaagttccaagatatttatactatatttgatttccttaaccggtgt-ccaggggcactagttaacattttcc 212  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||  |||| || |||||||| |||||||||||||    
T  16973079 gactacacaagttccaagatacttatactatatttggtttccttaactagtgtcccgggggcactggttaacattttcc 16973157  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 34145718 - 34145782
Alignment:
Q  149 caagatatttatactatatttgatttccttaaccggtg-tccaggggcactagttaacattttcc 212  Q
    ||||||||| |||||||||||||||| ||||| |  || |||||||||||| ||||| |||||||    
T  34145718 caagatattcatactatatttgattttcttaaacaatgctccaggggcacttgttaatattttcc 34145782  T

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Target: scaffold0031 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 77415 - 77336
Alignment:
Q  136 actacacaagttccaagatatttatactatatttgatttccttaaccggtgtccagg-ggcactagttaacattttccaa 214  Q
    |||||||||||| ||||||| | |||||||||||||||||||||||| ||| || || |||||| |||||||||||||||    
T  77415 actacacaagtttcaagatactcatactatatttgatttccttaaccagtgccccggaggcactcgttaacattttccaa 77336  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 10161373 - 10161448
Alignment:
Q  138 tacacaagttccaagatatttatactatatttgatttccttaaccggtgtccaggggcactagttaacattttcca 213  Q
    ||||||||||||||| || |||||||||||||| ||||||||||  ||| || ||||| |||||||||||||||||    
T  10161373 tacacaagttccaaggtacttatactatatttggtttccttaactagtgccctggggcgctagttaacattttcca 10161448  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 33584579 - 33584541
Alignment:
Q  69 tagttaaggaagcaagaaaagaaatatttgcattgaaaa 107  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  33584579 tagttaaggaaacaagaaaagaaatatttgcattgaaaa 33584541  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 10161304 - 10161349
Alignment:
Q  69 tagttaaggaagcaagaaaagaaatatttgcattgaaaacaccatt 114  Q
    ||||||||||| ||| ||| ||||||||||||||||||||| ||||    
T  10161304 tagttaaggaaacaaaaaaggaaatatttgcattgaaaacatcatt 10161349  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 26916890 - 26916966
Alignment:
Q  136 actacacaagttccaagatatttatactatatttgatttccttaaccggtgtccaggggcactagttaacattttcc 212  Q
    |||||||||||| |||  || ||||| |||||||| ||||||| ||  ||||||  || ||||||||||||||||||    
T  26916890 actacacaagtttcaaagtacttatattatatttggtttccttgacgagtgtcccaggacactagttaacattttcc 26916966  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 32651957 - 32652035
Alignment:
Q  135 gactacacaagttccaagatatttatactatatttgatttccttaaccggtgtccaggg-gcactagttaacattttcc 212  Q
    ||||||||||||| ||||| | |||||||||||||| |||||||||||||||||| ||| |||||  ||||||||||||    
T  32651957 gactacacaagtttcaagacacttatactatatttggtttccttaaccggtgtcccgggagcacttattaacattttcc 32652035  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 38198320 - 38198377
Alignment:
Q  157 ttatactatatttgatttccttaaccggtgtccag--gggcactagttaacattttcc 212  Q
    |||||||||||||||||||||||||| ||| || |  |||||||||||||||||||||    
T  38198320 ttatactatatttgatttccttaaccagtgcccggccgggcactagttaacattttcc 38198377  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 32651891 - 32651936
Alignment:
Q  69 tagttaaggaagcaagaaaagaaatatttgcattgaaaacaccatt 114  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  32651891 tagttaaggaaacaaaaaaagaaatatttgcattgaaaacatcatt 32651936  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 7174210 - 7174251
Alignment:
Q  140 cacaagttccaagatatttatactatatttgatttccttaac 181  Q
    |||||||||||||||||| |||||||||||| ||||| ||||    
T  7174210 cacaagttccaagatattcatactatatttggtttccataac 7174251  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 14847627 - 14847551
Alignment:
Q  136 actacacaagttccaagatatttatactatatttgatttccttaaccggtgtccaggggcactagttaacattttcc 212  Q
    ||||||||||||| |||| | |||||||||||||| ||||||||||| |||||| |||  ||||||||||| |||||    
T  14847627 actacacaagttctaagacacttatactatatttggtttccttaaccagtgtcccgggcgactagttaacaatttcc 14847551  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 35063736 - 35063689
Alignment:
Q  135 gactacacaagttccaagatatttatactatatttgatttccttaacc 182  Q
    |||||||||||||||||| || |||||||||||||| |||||||||||    
T  35063736 gactacacaagttccaaggtacttatactatatttggtttccttaacc 35063689  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 34422939 - 34422894
Alignment:
Q  69 tagttaaggaagcaagaaaagaaatatttgcattgaaaacaccatt 114  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  34422939 tagttaaggaaacaaaaaaagaaatatttgcattgaaaacatcatt 34422894  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 5493329 - 5493289
Alignment:
Q  69 tagttaaggaagcaagaaaagaaatatttgcattgaaaaca 109  Q
    ||||||||||| ||| ||| |||||||||||||||||||||    
T  5493329 tagttaaggaaacaaaaaaggaaatatttgcattgaaaaca 5493289  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 170
Target Start/End: Complemental strand, 31519 - 31484
Alignment:
Q  135 gactacacaagttccaagatatttatactatatttg 170  Q
    |||||||||||||||||||||||| |||||||||||    
T  31519 gactacacaagttccaagatatttttactatatttg 31484  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 38380322 - 38380244
Alignment:
Q  135 gactacacaagttccaagatatttatactatatttgatttccttaaccggtgtccagggg-cactagttaacattttcc 212  Q
    |||||||||| ||||||  || |||||||||||||| ||||||||||  |||||| ||||  ||||||||| |||||||    
T  38380322 gactacacaaattccaaagtacttatactatatttggtttccttaactagtgtcccggggatactagttaatattttcc 38380244  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 2321913 - 2321873
Alignment:
Q  69 tagttaaggaagcaagaaaagaaatatttgcattgaaaaca 109  Q
    ||||||||||| ||| | |||||||||||||||||||||||    
T  2321913 tagttaaggaaacaaaagaagaaatatttgcattgaaaaca 2321873  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 33632865 - 33632793
Alignment:
Q  135 gactacacaagttccaagatatttatactatatttgatttccttaaccggtgtccaggggcactagttaacat 207  Q
    |||| ||||| || |||| || |||||||||||||| ||||||||||| ||  || ||| |||||||||||||    
T  33632865 gactgcacaaatttcaaggtacttatactatatttggtttccttaaccagttccccgggacactagttaacat 33632793  T

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