View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2950_high_6 (Length: 342)
Name: NF2950_high_6
Description: NF2950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2950_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 334
Target Start/End: Original strand, 4439470 - 4439787
Alignment:
| Q |
17 |
atcctgtcatgcctccttaccaaaaccgctgttaccactggctgtctgtctcaccgatggcgacacctttggcaacatctccgtgtgctagatttctatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4439470 |
atcctgtcatgcctccttaccaaaaccgctgttaccactggctgtctgtctcaccgatggcgacacctttggcaacatctccgtgtgctagatttctatg |
4439569 |
T |
|
| Q |
117 |
atgactccctctactctgataaccccatcgaactcaaaaagtttgtttttctggtgaccagggtgcttaccctccttcgtaatcctcgcggcattcggaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
4439570 |
atgactccctctactctgataaccccatcgaactcaaaaagtttgtttttctggtgaccggggtgcttaccctccttcctaatcctcgcggcattcggaa |
4439669 |
T |
|
| Q |
217 |
gatgcgtctccactgtgctcattccgttatcaacgacgacaattttcatgatcattcacttgacacttgggtttgtcctgtcattgggccttaccttgag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4439670 |
gatgcgtctccactgtgctcattccgttatcaacgacgacaattttcatgatcattcacttgacacttgggtttgtcctgtcattgggccttaccttgag |
4439769 |
T |
|
| Q |
317 |
gaactcgaccttcatctc |
334 |
Q |
| |
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|||||||||||| ||||| |
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| T |
4439770 |
gaactcgaccttgatctc |
4439787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 188 - 327
Target Start/End: Complemental strand, 8396460 - 8396321
Alignment:
| Q |
188 |
ctccttcgtaatcctcgcggcattcggaagatgcgtctccactgtgctcattccgttatcaacgacgacaattttcatgatcattcacttgacacttggg |
287 |
Q |
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| T |
8396460 |
ctcctacgtaatcccagcggcattcggaagatgcgtcttaactgtgctcactccattatcaacgacaacaatttacgtgcccgttcagttgacagttggg |
8396361 |
T |
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| Q |
288 |
tttgtcctgtcattgggccttaccttgaggaactcgacct |
327 |
Q |
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|| || |||||||||||| |||| |||||||||||||| |
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| T |
8396360 |
ttcgtgtcgtcattgggcctcacctcgaggaactcgacct |
8396321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 8396624 - 8396524
Alignment:
| Q |
17 |
atcctgtcatgcctccttaccaaaaccgctgttaccactggctgtctgtctcaccgatggcgacacctttggcaacatctccgtgtgctagatttctatg |
116 |
Q |
| |
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|||||||||| ||||| |||||||| |||| |||||||| |||| |||| |||||||| |||||||||| ||||||||| ||||||||||||||||| |
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| T |
8396624 |
atcctgtcatacctcccgaccaaaactattgtttccactggccgtctttctcgccgatggcaacacctttggaaacatctccatgtgctagatttctatg |
8396525 |
T |
|
| Q |
117 |
a |
117 |
Q |
| |
|
| |
|
|
| T |
8396524 |
a |
8396524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 324
Target Start/End: Complemental strand, 8369125 - 8369007
Alignment:
| Q |
206 |
ggcattcggaagatgcgtctccactgtgctcattccgttatcaacgacgacaattttcatgatcattcacttgacacttgggtttgtcctgtcattgggc |
305 |
Q |
| |
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||||||||||| |||||||| ||||||||| ||| || || | ||||||||||| | | ||| || |||||||||||||| || |||||||||||| |
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| T |
8369125 |
ggcattcggaaaatgcgtcttacctgtgctcactcccttgtcgatgacgacaatttccgttcccatacagttgacacttgggttcgttctgtcattgggc |
8369026 |
T |
|
| Q |
306 |
cttaccttgaggaactcga |
324 |
Q |
| |
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|| | || ||||||||||| |
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| T |
8369025 |
ctcaactcgaggaactcga |
8369007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 8369289 - 8369217
Alignment:
| Q |
45 |
ctgttaccactggctgtctgtctcaccgatggcgacacctttggcaacatctccgtgtgctagatttctatga |
117 |
Q |
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||||| |||| ||| |||| |||| || |||| |||||||||| ||||||||| ||||||||||||| |||| |
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| T |
8369289 |
ctgttgccaccggccgtctatctcgccagtggcaacacctttggaaacatctccatgtgctagatttcaatga |
8369217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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