View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2950_low_11 (Length: 308)
Name: NF2950_low_11
Description: NF2950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2950_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 5 - 301
Target Start/End: Original strand, 28181871 - 28182173
Alignment:
| Q |
5 |
gtgaaacttgactctgagccgttttggaattcaaatttgatgtcttgagcaaccacacacaacaatttaccgatacgttccgaaaacgcgccgtcatgaa |
104 |
Q |
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| T |
28181871 |
gtgaaacttgactctgacccgttttggaattcaaatttgatgtcttgagcaaccacgcgcaacaaattaccgatgcattctgaaaacgcgccgtcatgaa |
28181970 |
T |
|
| Q |
105 |
gcgcgtgtgagtagttgagtgcgtggactggaatttccaaattaggcaagcgcgtggaagataatctcctatcttcatga------ccatttgtaagaag |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28181971 |
gcgcgtgtgagtagttgagtgcgtggactggaatttccaaattaggcaagcgcgtggaagataatctcctatcttcatgaccatttccatttgtaagaag |
28182070 |
T |
|
| Q |
199 |
tataattttggcaacaggattcttctgtctccgatcttctagaatcttcgccgctttcttcaccgcctccttcctcgccggaactccgtcaccattcatc |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28182071 |
tataattttggcaacaggattcttctgtctccgatcttctagaatcttcgcggctttcttcaccgcctccttcctcgccggaaatccgtcaccattcatc |
28182170 |
T |
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| Q |
299 |
tca |
301 |
Q |
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||| |
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| T |
28182171 |
tca |
28182173 |
T |
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