View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2950_low_13 (Length: 282)
Name: NF2950_low_13
Description: NF2950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2950_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 3118416 - 3118676
Alignment:
| Q |
16 |
caggccacataggaatcacaatatacacacagaatctctctctgtgtttgattttgtttgctatctttagagcaatttccattggaattaaattgtttgc |
115 |
Q |
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| T |
3118416 |
caggccacataggaatcacaatatacacacagaatctctctttgtgtttgattttgtttgctatctttagagcaatttccattggaattaaattgtttgc |
3118515 |
T |
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| Q |
116 |
acctgttataaaagcaaaggaatgaatataacaaggatgcttgttgcaacatatataatataatactttctctttcatttatacacttttattaatctct |
215 |
Q |
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| T |
3118516 |
acctgttataaaagcaaaggaatgaatataacaaggatgcttgttgcaacctatatagtataatactttctctttcatttatacacttttattaatctct |
3118615 |
T |
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| Q |
216 |
gtgcgttaaaaagtagattattgtgaaacaagtttacaccactcctctccgtctctttgct |
276 |
Q |
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| T |
3118616 |
gtgcgttaaaaagtagattattgtgaaacaagtttacatcactcctctccgtctctttgct |
3118676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 3111931 - 3112094
Alignment:
| Q |
16 |
caggccacataggaatcacaatatacacacagaatctctctctgtgtttgattttgtttgctatctttagagcaatttccattggaattaaattgtttgc |
115 |
Q |
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| T |
3111931 |
caggccacataggaatcacaatatacacagagaatctttctttctgtttgattttgttggctatttttagtgcaatttcaatcggaattaagttgtttgc |
3112030 |
T |
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| Q |
116 |
acctgt-tataaaagcaaaggaatgaatataacaaggatgcttgttgcaacatatataatataa |
178 |
Q |
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| T |
3112031 |
acctgtgaataaaagaaaaggaatgaatataacaaggatgcctgttgcaacctatatattataa |
3112094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 35968832 - 35968864
Alignment:
| Q |
181 |
ctttctctttcatttatacacttttattaatct |
213 |
Q |
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| T |
35968832 |
ctttctctttcatttatacactttttttaatct |
35968864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 109
Target Start/End: Complemental strand, 28534524 - 28534493
Alignment:
| Q |
78 |
atctttagagcaatttccattggaattaaatt |
109 |
Q |
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| T |
28534524 |
atctttagagcaatttccattggaattaaatt |
28534493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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