View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2950_low_14 (Length: 281)
Name: NF2950_low_14
Description: NF2950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2950_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 11360087 - 11360345
Alignment:
| Q |
11 |
gagatgcatcatagtctttagtgatgacaagtgataaactttccacattgtttcttggtgtaaaaagaagagtcctattcacaaagtttataaagttttg |
110 |
Q |
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| T |
11360087 |
gagatgcatcatagtctttagtgatgacaagtgataaactttccacattgtttcttggtgtaaaaagaagagtcctattcacaaagtttataaagttttg |
11360186 |
T |
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| Q |
111 |
ttttgcacctgatttattcctcctttgagaatagaacacaccatcatctaaatctagcttggtgatggagatccaatggtttatccatttcttagataag |
210 |
Q |
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| T |
11360187 |
ttttgcacctgatttattcctcctttgagaatagaacacaccatcatctaaatctagcttggtgatggagatccaatggtttaaccatttcttagataag |
11360286 |
T |
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| Q |
211 |
acacttgtacgaactgcatcttttgtaggaagaaaagatataatgtgagttataagtga |
269 |
Q |
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| T |
11360287 |
acacttgtacgaactgcatcttttgtaggaagacaagatataatgtgagttataagtga |
11360345 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 30715740 - 30715646
Alignment:
| Q |
85 |
ctattcacaaagtttataaagttttgttttgcacctgatttattcctccttt---gagaatagaacacaccatcatctaaatctagcttggtgat |
176 |
Q |
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| T |
30715740 |
ctattgacaaagtttataaagtgttgttttccacctgattttttcttacttttgggagaatggaacacactatcatctaagtccaacttggtgat |
30715646 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 1079088 - 1079020
Alignment:
| Q |
202 |
ttagataagacacttgtacgaactgcatcttttgtaggaagaaaagatataatgtgagttataagtgat |
270 |
Q |
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| T |
1079088 |
ttagataagacacaagtgcgaacggcatctttggttgggagaaaagagatgatgtgagttataagtgat |
1079020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 270
Target Start/End: Original strand, 5132718 - 5132786
Alignment:
| Q |
202 |
ttagataagacacttgtacgaactgcatcttttgtaggaagaaaagatataatgtgagttataagtgat |
270 |
Q |
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| T |
5132718 |
ttagataagacacaagtgcgaacggcatctttggttgggagaaaagagatgatgtgagttataagtgat |
5132786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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