View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2950_low_16 (Length: 243)
Name: NF2950_low_16
Description: NF2950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2950_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 50663153 - 50662930
Alignment:
| Q |
1 |
taatgtaaaaaacattgtccatatttattttgattcagatataaaaatgtcagcggtgaatatgtccaccataagacttccgacagcttctttgcacgga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50663153 |
taatgtaaaaaacattgtccatatttattttgattcaga-ataaaaatgtcagcggtgaatatgtccaccatgagacttccgacagcttctttgcacgga |
50663055 |
T |
|
| Q |
101 |
acggcttcctctaggacatcttgtgctcttctgaagaatccatcaactttgagatctgtgaagaatgtgtccaaaagatttggactgaaatcttcctcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50663054 |
acggcttcctctaggacatcttgtgctcttctgaagaatccatcaactttgagatctgtgaagaatgtgtccaaaagatttggactaaaatcttcctcat |
50662955 |
T |
|
| Q |
201 |
ttagaatctcagcaatggcagtata |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
50662954 |
ttagaatctcagcaatggcagtata |
50662930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 50653478 - 50653274
Alignment:
| Q |
21 |
atatttattttgattcagatataaaaatgtcagcggtgaatatgtccaccataagacttccgacagcttctttgcacggaacggcttcctctaggacatc |
120 |
Q |
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||||||||||| |||||| ||| ||||||||||| |||||||||||| | | |||||| | |||||||| ||| ||||||| || | ||| ||||||| |
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| T |
50653478 |
atatttatttttattcaggtatgaaaatgtcagctgtgaatatgtccgctgtgagacttacaacagcttcattgtacggaacagcgccgtctcggacatc |
50653379 |
T |
|
| Q |
121 |
ttgtgctcttctgaagaatccatcaactttgagatctgtgaagaatgtgtccaaaagatttggactgaaatcttcctcatttagaatctcagcaatggca |
220 |
Q |
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||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| | || ||||||||| |
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| T |
50653378 |
ttgtgctctgaggaagagtccatcaagtttgagatctgtgaagaatgtgtccaaaacatttggactaaaatcttcctcatttagagtatctgcaatggca |
50653279 |
T |
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| Q |
221 |
gtata |
225 |
Q |
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||||| |
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| T |
50653278 |
gtata |
50653274 |
T |
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Back To:
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