View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2950_low_2 (Length: 764)
Name: NF2950_low_2
Description: NF2950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2950_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 701; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 701; E-Value: 0
Query Start/End: Original strand, 25 - 758
Target Start/End: Complemental strand, 39084709 - 39083980
Alignment:
| Q |
25 |
ctattttaccacgtaaaacaaccatatataatacatgaaatttcataataattaatttatgcacgtgtacgcttgagatgcataaatcaatgctctaatc |
124 |
Q |
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| T |
39084709 |
ctattttaccacgtaaaacaaccata----atacatgaaatttcataataattaatttatgcacgtgtacgattgagatgcataaatcaatgctctaatc |
39084614 |
T |
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| Q |
125 |
cttaagattccgaatttactaaagtaaatgaaaacaaagaacaaactgataaaaggatttcacagtttcatttgagcagcattacagaatttggtatatg |
224 |
Q |
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| T |
39084613 |
cttaagattccgaatttactaaagtaaatgaaaacaaagaacaaactgaaaaaaggatttcacagtttcatttgagcagcattacagaatttggtatatg |
39084514 |
T |
|
| Q |
225 |
cagaaaaggatctaagttacacctaagatacacacatgcaaatgcaattaaacaagaaccatactcattaacataatttctacacataataatacccaac |
324 |
Q |
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| T |
39084513 |
cagaaaaggatctaagttacacctaagatacacacatgcaaatgcaattaaacaagaaccatactcattaacataatttctacacataataatacccaac |
39084414 |
T |
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| Q |
325 |
attaatccacaatatttatttaactactaaccaaaactaaaataactataccactaaaaactcttgaggaacaaccaatgagtatgttttttctcaatat |
424 |
Q |
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| T |
39084413 |
attaatccacaatatttatttaactactaaccaaaactaaaataactataccactaaaaactcttgaggaacaaccaatgagtatgttttttctcaatat |
39084314 |
T |
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| Q |
425 |
tcttctccttaatagtatccaagctaggcttccaccctttccctgaaatctgcctattcaaataatctggtctcccttccattatttccggcaaattctc |
524 |
Q |
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| T |
39084313 |
tcttctccttaatagtatccaagctaggcttccaccctttccctgaaatctgcctattcaaataatctggtctcccttccattatttccggcaaattctc |
39084214 |
T |
|
| Q |
525 |
cgaaaaatcatgtctctctcccttctcctccatcacctcttcctttctctgaggctccacaatttcactgttatgacataaactactaaaccaaggaaga |
624 |
Q |
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| T |
39084213 |
cgaaaaatcatgtctctctcccttctcctccatcacctcttcctttctctgaggttccacaatttcactgttatgacataaactactaaaccaaggaaga |
39084114 |
T |
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| Q |
625 |
aacttagaagaacacaaaacataattagaattcagaatagaattaaccatcaaaagaactcggcgagtttcttcaccgcttaaaccaataggcttccctt |
724 |
Q |
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| T |
39084113 |
aacttagaagaacacaaaacataattagaattcagaatagaattaaccatcaaaagaactcggcgagtttcttcgccgcttaaaccaataggcttccctt |
39084014 |
T |
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| Q |
725 |
gcttcactggaagcatcaaatatatcttgttcat |
758 |
Q |
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| T |
39084013 |
gcttcactggaagcatcaaatatatcttgttcat |
39083980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 424 - 487
Target Start/End: Original strand, 44729752 - 44729815
Alignment:
| Q |
424 |
ttcttctccttaatagtatccaagctaggcttccaccctttccctgaaatctgcctattcaaat |
487 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||| | |||||| |||||| |
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| T |
44729752 |
ttcttttccttaattgtatccaagctaggcttccaccctttccctgataattgcctactcaaat |
44729815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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