View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2950_low_3 (Length: 761)

Name: NF2950_low_3
Description: NF2950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2950_low_3
NF2950_low_3
[»] chr7 (3 HSPs)
chr7 (59-318)||(27658751-27659010)
chr7 (376-570)||(27658500-27658694)
chr7 (638-745)||(27658325-27658432)
[»] chr5 (6 HSPs)
chr5 (376-570)||(37605369-37605564)
chr5 (59-269)||(37605065-37605274)
chr5 (634-745)||(37605628-37605739)
chr5 (385-570)||(33360553-33360739)
chr5 (382-570)||(5742798-5742984)
chr5 (673-742)||(33360837-33360907)
[»] chr6 (2 HSPs)
chr6 (385-570)||(18084829-18085015)
chr6 (673-742)||(18085113-18085183)
[»] scaffold0856 (2 HSPs)
scaffold0856 (385-570)||(800-986)
scaffold0856 (673-742)||(1084-1154)
[»] chr4 (1 HSPs)
chr4 (91-221)||(25006830-25006960)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 59 - 318
Target Start/End: Complemental strand, 27659010 - 27658751
Alignment:
Q  59 tcaattcatcactgacactatatcttttaaattatatgttcaactgtgtttatattcactttcatactgtactcaatgagataacttttccttacaattc 158  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27659010 tcaattcatcactgacactatatcttttaaattatatgttcaagtgtgtttatattcactttcatactgtactcaatgagataacttttccttacaattc 27658911  T
Q  159 ttaccacttttctattaaaactaccactcttctttggaatgcaaagaaagcttaggtgagtgtgggnnnnnnnccaacaaaaacatgttgtgaactcaga 258  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  27658910 ttaccacttttctattaaaactaccaatcttctttggaatgcaaagaaagcttaggtgagtgtggg-aaaaaaccaacaaaaacatgttgtgaactcaga 27658812  T
Q  259 gcacaacacagctcaaaaaacagaccct-ccccttaaaactaactcacatactttttcatt 318  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  27658811 gcacaacacagctcaaaaaacagaccctcccccttaaaactaactcgcatactttttcatt 27658751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 376 - 570
Target Start/End: Complemental strand, 27658694 - 27658500
Alignment:
Q  376 ttgattatggggtattagatttaagtattagctattttgaagtctataatcatgcaattaagttgagaaaattaatattgaacatattcagtatataaat 475  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27658694 ttgattatggggtattagatttaagtattagctgttttgaagtctataatcatgcaattaagttgagaaaattaatattgaacatattcagtatataaat 27658595  T
Q  476 cttaatcaacttcatcatttcgtcaattcaaaaatttagggtttttaattagaaatttggggaaaacgaaaataatgaaggaatcatctcacccc 570  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27658594 cttaatcaatttcatcatttcgtcaattcaaaaatttagggtttttaatttgaaatttggggaaaacgaaaataatgaaggaatcatctcacccc 27658500  T

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Target: chr7; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 638 - 745
Target Start/End: Complemental strand, 27658432 - 27658325
Alignment:
Q  638 ggtttaggattttttatcttcttcttatctactaagaatcaaaccaacgtttagcacaacaaggtataacaacaattacaagccactgaaattctaaaaa 737  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27658432 ggtttaggatttttttccttcttcttatctactaagaatcaaaccaacgtttagcacaacaaggtataacaacaattacaagccactgaaattctaaaaa 27658333  T
Q  738 caagaaca 745  Q
    ||||||||    
T  27658332 caagaaca 27658325  T

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Target: chr5 (Bit Score: 160; Significance: 7e-85; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 376 - 570
Target Start/End: Original strand, 37605369 - 37605564
Alignment:
Q  376 ttgattatggggtattagatttaagtattagctattttgaagtctataatcatgcaattaagttgagaaaattaatattgaacatattcagtatat-aaa 474  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  37605369 ttgattatggggtattagatttaagtattagctgtgttgaagtctataatcatgcaattaagttgagaaaattaatattgaatatattcagtatataaaa 37605468  T
Q  475 tcttaatcaacttcatcatttcgtcaattcaaaaatttagggtttttaattagaaatttggggaaaacgaaaataatgaaggaatcatctcacccc 570  Q
     ||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37605469 ccttaatcaatttcatcatttagtcaattcaaaaatttagggtttttaatttgaaatttggggaaaacgaaaataatgaaggaatcatctcacccc 37605564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 59 - 269
Target Start/End: Original strand, 37605065 - 37605274
Alignment:
Q  59 tcaattcatcactgacactatatcttttaaattatatgttcaactgtgtttatattcactttcatactgtactcaatgagataacttttccttacaattc 158  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||||||||| ||||||||||    
T  37605065 tcaattcatcactgacactatttcttttaaattatatgttcaagtgtgtttacattcactttcatactctactgaatgagataactttttcttacaattc 37605164  T
Q  159 ttaccacttttctattaaaactaccactcttctttggaatgcaaagaaagcttaggtgagtgtgggnnnnnnnccaacaaaaacatgttgtgaactcaga 258  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||       |||||||||||||||||||||||||||    
T  37605165 ttactacttttctattaaaactaccaatcttctttggaatgcaaagaaagattaggtgagtgtggg-aaaaaaccaacaaaaacatgttgtgaactcaga 37605263  T
Q  259 gcacaacacag 269  Q
    |||||||||||    
T  37605264 gcacaacacag 37605274  T

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Target: chr5; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 634 - 745
Target Start/End: Original strand, 37605628 - 37605739
Alignment:
Q  634 tttgggtttaggattttttatcttcttcttatctactaagaatcaaaccaacgtttagcacaacaaggtataacaacaattacaagccactgaaattcta 733  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37605628 tttgggtttaggaatttttttcttcttcttatctactaagaatcaaaccaaagtttagcacaacaaggtataacaacaattacaagccactgaaattcta 37605727  T
Q  734 aaaacaagaaca 745  Q
    ||||||||||||    
T  37605728 aaaacaagaaca 37605739  T

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Target: chr5; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 385 - 570
Target Start/End: Original strand, 33360553 - 33360739
Alignment:
Q  385 gggtattagatttaagtattagctattttgaagtctataatcatgcaattaagttgagaaaattaatattgaacatattcagtatat-aaatcttaatca 483  Q
    |||||| |||||||||||||||| || |  |||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| ||| || |||||    
T  33360553 gggtatcagatttaagtattagcaatgtctaagtctgtaatcatgaaattaagttgagaaaattaatattgagcatattcattatataaaacctgaatca 33360652  T
Q  484 acttcatcatttcgtcaattcaaaaatttagggtttttaattagaaatttggggaaaacgaaaataatgaaggaatcatctcacccc 570  Q
    | ||||| |||| ||||||||||||||||||||||| | |||  ||||| ||||||||||||||| ||||||||| |||||||||||    
T  33360653 atttcattatttagtcaattcaaaaatttagggtttgtgatttaaaattgggggaaaacgaaaatgatgaaggaaccatctcacccc 33360739  T

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Target: chr5; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 382 - 570
Target Start/End: Complemental strand, 5742984 - 5742798
Alignment:
Q  382 atggggtattagatttaagtattagctattttgaagtctataatcatgcaattaagttgagaaaattaatattgaacatattcagtatataaatcttaat 481  Q
    ||||||||| | |||||||||||||| || |  |||| | |||||||| |||||||||||||||||||||||||| |||||||| |||| ||| | |       
T  5742984 atggggtatcaaatttaagtattagcaatatctaagtttgtaatcatgaaattaagttgagaaaattaatattgagcatattcattataaaaaacct--g 5742887  T
Q  482 caacttcatcatttcgtcaattcaaaaatttagggtttttaattagaaatttggggaaaacgaaaataatgaaggaatcatctcacccc 570  Q
    ||| ||||| |||| ||||||| ||||||||||||||| | ||| |||||| ||||||||||||||| ||||||| | ||||| |||||    
T  5742886 caatttcattatttagtcaattaaaaaatttagggtttgtgatttgaaattgggggaaaacgaaaatgatgaagggaccatcttacccc 5742798  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 673 - 742
Target Start/End: Original strand, 33360837 - 33360907
Alignment:
Q  673 gaatcaaaccaacgtttagcacaac-aaggtataacaacaattacaagccactgaaattctaaaaacaaga 742  Q
    |||||||||||||||||  | |||| |||||| ||||| || ||||||| ||| |||||||||||||||||    
T  33360837 gaatcaaaccaacgttttcctcaaccaaggtaaaacaataactacaagctactaaaattctaaaaacaaga 33360907  T

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Target: chr6 (Bit Score: 95; Significance: 4e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 385 - 570
Target Start/End: Original strand, 18084829 - 18085015
Alignment:
Q  385 gggtattagatttaagtattagctattttgaagtctataatcatgcaattaagttgagaaaattaatattgaacatattcagtatat-aaatcttaatca 483  Q
    |||||| |||||||||||||||| || |  |||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| ||| || |||||    
T  18084829 gggtatcagatttaagtattagcaatgtctaagtctgtaatcatgaaattaagttgagaaaattaatattgagcatattcattatataaaacctgaatca 18084928  T
Q  484 acttcatcatttcgtcaattcaaaaatttagggtttttaattagaaatttggggaaaacgaaaataatgaaggaatcatctcacccc 570  Q
    | ||||| |||| ||||||||||||||||||||||| | |||  ||||| ||||||||||||||| ||||||||| |||||||||||    
T  18084929 atttcattatttagtcaattcaaaaatttagggtttgtgatttaaaattgggggaaaacgaaaatgatgaaggaaccatctcacccc 18085015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 673 - 742
Target Start/End: Original strand, 18085113 - 18085183
Alignment:
Q  673 gaatcaaaccaacgtttagcacaac-aaggtataacaacaattacaagccactgaaattctaaaaacaaga 742  Q
    |||||||||||||||||  | |||| |||||| ||||| || ||||||| ||| |||||||||||||||||    
T  18085113 gaatcaaaccaacgttttcctcaaccaaggtaaaacaataactacaagctactaaaattctaaaaacaaga 18085183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0856 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 385 - 570
Target Start/End: Original strand, 800 - 986
Alignment:
Q  385 gggtattagatttaagtattagctattttgaagtctataatcatgcaattaagttgagaaaattaatattgaacatattcagtatat-aaatcttaatca 483  Q
    |||||| |||||||||||||||| || |  |||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| ||| || |||||    
T  800 gggtatcagatttaagtattagcaatgtctaagtctgtaatcatgaaattaagttgagaaaattaatattgagcatattcattatataaaacctgaatca 899  T
Q  484 acttcatcatttcgtcaattcaaaaatttagggtttttaattagaaatttggggaaaacgaaaataatgaaggaatcatctcacccc 570  Q
    | ||||| |||| || |||||||||||||||||||| | |||  ||||| ||||||||||||||| ||||||||| |||||||||||    
T  900 atttcattatttagtaaattcaaaaatttagggtttgtgatttaaaattgggggaaaacgaaaatgatgaaggaaccatctcacccc 986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0856; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 673 - 742
Target Start/End: Original strand, 1084 - 1154
Alignment:
Q  673 gaatcaaaccaacgtttagcacaac-aaggtataacaacaattacaagccactgaaattctaaaaacaaga 742  Q
    |||||||||||||||||  | |||| |||||| ||||| || ||||||| ||| |||||||||||||||||    
T  1084 gaatcaaaccaacgttttcctcaaccaaggtaaaacaataactacaagctactaaaattctaaaaacaaga 1154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 91 - 221
Target Start/End: Complemental strand, 25006960 - 25006830
Alignment:
Q  91 tatatgttcaactgtgtttatattcactttcatactgtactcaatgagataacttttccttacaattcttaccacttttctattaaaactaccactcttc 190  Q
    ||||||||||| |||||||| ||||||||||||||| |||| ||| |||| |||||| ||||||||||||  || |||||||| |||||||| | ||| |    
T  25006960 tatatgttcaagtgtgtttagattcactttcatactctactgaataagatcacttttacttacaattcttttcaattttctatcaaaactactaatctcc 25006861  T
Q  191 tttggaatgcaaagaaagcttaggtgagtgt 221  Q
    |||||  ||||||||||| ||| ||||||||    
T  25006860 tttgggttgcaaagaaagattaagtgagtgt 25006830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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