View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2950_low_5 (Length: 444)

Name: NF2950_low_5
Description: NF2950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2950_low_5
NF2950_low_5
[»] chr3 (8 HSPs)
chr3 (19-425)||(5333418-5333823)
chr3 (19-425)||(29518244-29518653)
chr3 (19-239)||(12835925-12836156)
chr3 (134-247)||(45335045-45335158)
chr3 (280-425)||(12836159-12836301)
chr3 (106-199)||(38274365-38274462)
chr3 (359-425)||(20176331-20176397)
chr3 (129-167)||(45335161-45335199)
[»] chr4 (4 HSPs)
chr4 (19-237)||(1239992-1240221)
chr4 (270-425)||(1239845-1239997)
chr4 (45-125)||(18368486-18368570)
chr4 (45-125)||(36594353-36594437)
[»] chr8 (6 HSPs)
chr8 (19-239)||(21116910-21117141)
chr8 (19-236)||(10626087-10626315)
chr8 (280-425)||(21116765-21116907)
chr8 (280-425)||(10625939-10626081)
chr8 (45-125)||(19512069-19512153)
chr8 (47-125)||(35339057-35339139)
[»] chr7 (1 HSPs)
chr7 (36-120)||(45805179-45805267)
[»] chr1 (1 HSPs)
chr1 (43-125)||(42599855-42599941)


Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 5333418 - 5333823
Alignment:
Q  19 agtgcgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatcttggaggggaatgtttatcgcc 118  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5333418 agtgtgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatcttggagggaaatgtttatcgcc 5333517  T
Q  119 atgtctagaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatacttatctttagtgatcagac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  5333518 atgtctagaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatacttatcgttagtgattagac 5333617  T
Q  219 atacttatcttagtatttgtttaggttcccttgtgattgtttacttctctctatttgcaggacaaatgcttatgtgtttatttacatgatgttgctgaag 318  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | |||| ||||||| ||||||||||||||||||||||||||    
T  5333618 atacttatcgtagtatttgtttaggttcccttatgattgtttacttctctctatttgctgaacaattgcttatatgtttatttacatgatgttgctgaag 5333717  T
Q  319 aattgatattgataaagccttttattttcctcttattcgagtatcgtgtttttaagttttattgttactttgtatgacaggttataactagaaccgatat 418  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  5333718 aattgatattgataaagccttttattttcctctta-tcgagtatcgtgtttttaagttttattgttattttgtatgataggttataactagaaccgatat 5333816  T
Q  419 tgaaaaa 425  Q
    |||||||    
T  5333817 tgaaaaa 5333823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 29518653 - 29518244
Alignment:
Q  19 agtgcgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatcttggaggggaatgtttatcgcc 118  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29518653 agtgtgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatcttggagggaaatgtttatcgcc 29518554  T
Q  119 atgtcta----gaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatacttatctttagtgatc 214  Q
    |||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  29518553 atgtctaatgagaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatacttatcgttagtgatt 29518454  T
Q  215 agacatacttatcttagtatttgtttaggttcccttgtgattgtttacttctctctatttgcaggacaaatgcttatgtgtttatttacatgatgttgct 314  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | |||| ||||| | ||||||||||||||||||||||    
T  29518453 agacatacttatcgtagtatttgtttaggttcccttatgattgtttacttctctctatttgctgaacaattgcttgtatgtttatttacatgatgttgct 29518354  T
Q  315 gaagaattgatattgataaagccttttattttcctcttattcgagtatcgtgtttttaagttttattgttactttgtatgacaggttataactagaaccg 414  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  29518353 gaagaattgatattgataaagccttttattttcctctta-tcgagtatcgtgtttttaagttttattgttactttgtatgataggttataactagaacca 29518255  T
Q  415 atattgaaaaa 425  Q
    |||||||||||    
T  29518254 atattgaaaaa 29518244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 12835925 - 12836156
Alignment:
Q  19 agtgcgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttat 114  Q
    |||| |||| ||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||||||||||||     |||||||| |||||||||    
T  12835925 agtgtgtggctgctctcgatggactagaagacatttcagatgatacctatggaaaagctttggaaaagtttaaggattctgattggagggaaatgtttat 12836024  T
Q  115 cgccatgtcta----gaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatactt---atcttt 207  Q
    ||||||| |||    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||||||    
T  12836025 cgccatgcctaatgagaggaagcgtggatgggtacttaggctctaaggatataacatgtatttgtttaggttctagtgatgagacatacttatcatcttt 12836124  T
Q  208 agtgatcagacatacttatcttagtatttgtt 239  Q
    |||||||| |||||||||||||||||||||||    
T  12836125 agtgatcaaacatacttatcttagtatttgtt 12836156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 134 - 247
Target Start/End: Complemental strand, 45335158 - 45335045
Alignment:
Q  134 gtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatacttatctttagtgatcagacatacttatcttagta 233  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45335158 gtggatgggtacttaggctctaaggatataacttgaatttgtttaggttctagtgatgagacatacttatctttagtgatcagacatacttatcttagta 45335059  T
Q  234 tttgtttaggttcc 247  Q
    ||||||||||||||    
T  45335058 tttgtttaggttcc 45335045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 280 - 425
Target Start/End: Original strand, 12836159 - 12836301
Alignment:
Q  280 acaaatgcttatgtgtttatttacatgatgttgctgaagaattgatattgataaagccttttattttcctcttattcgagtatcgtgtttttaagtttta 379  Q
    |||| ||||| |||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  12836159 acaattgcttgtgtgtttatttacatgatgttgctga-gaattgatattg-taaaaccttttattttcctcttat-cgagtatcgtgtttttaagtttta 12836255  T
Q  380 ttgttactttgtatgacaggttataactagaaccgatattgaaaaa 425  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||||    
T  12836256 ttgttactttgtatgacaagttataactataactgatattgaaaaa 12836301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 38274462 - 38274365
Alignment:
Q  106 aatgtttatcgccatgtcta----gaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatac 199  Q
    ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38274462 aatgtttatcgccatgtctaatgagaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatac 38274365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 359 - 425
Target Start/End: Complemental strand, 20176397 - 20176331
Alignment:
Q  359 gtatcgtgtttttaagttttattgttactttgtatgacaggttataactagaaccgatattgaaaaa 425  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  20176397 gtatcgtgtttttaagttttattgttattttgtatgataggttataactagaaccgatattgaaaaa 20176331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 167
Target Start/End: Complemental strand, 45335199 - 45335161
Alignment:
Q  129 gaagcgtggatgggtacttaggctctaaggatataactt 167  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  45335199 gaagcgtggatgggtacttaggctttaaggatataactt 45335161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 1240221 - 1239992
Alignment:
Q  19 agtgcgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttat 114  Q
    |||| |||| ||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||||||||||||     |||||||| |||||||||    
T  1240221 agtgtgtggctgctctcgatggactagaagacatttcagatgatacctatggaaaagctttggaaaagtttaaggattctgattggagggaaatgtttat 1240122  T
Q  115 cgccatgtcta----gaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatactt---atcttt 207  Q
    ||||||| |||    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||||||    
T  1240121 cgccatgcctaatgagaggaagcgtggatggatacttaggctctaaggatataacctgtatttgtttaggttctagtgatgagacatacttatcatcttt 1240022  T
Q  208 agtgatcagacatacttatcttagtatttg 237  Q
    ||||||| ||||||||||||||||||||||    
T  1240021 agtgatcggacatacttatcttagtatttg 1239992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 270 - 425
Target Start/End: Complemental strand, 1239997 - 1239845
Alignment:
Q  270 tatttgcaggacaaatgcttatgtgtttatttacatgatgttgctgaagaattgatattgataaagccttttattttcctcttattcgagtatcgtgttt 369  Q
    ||||||| | |||| ||||| ||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||||||||| ||||||||||||||    
T  1239997 tatttgctgaacaattgcttgtgtgtttatttacatgatgtttctga-gaattgatattg-taaaaccttttattttcctcttat-cgagtatcgtgttt 1239901  T
Q  370 ttaagttttattgttactttgtatgacaggttataactagaaccgatattgaaaaa 425  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  1239900 ttaagttttattgttactttgtatgacaggttataactataactgatattgaaaaa 1239845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 18368486 - 18368570
Alignment:
Q  45 gaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttatcgccatgtcta 125  Q
    |||||||||||||||||    ||||| |||||||||||||| ||||||||||    |||||||| |||||||||||| |||||||    
T  18368486 gaagacatttcagatgacatctatgggaaagccttggaaaaatttaaggatcctgattggagggaaatgtttatcgctatgtcta 18368570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 36594437 - 36594353
Alignment:
Q  45 gaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttatcgccatgtcta 125  Q
    |||||||||||||||||    ||||| |||||||||||||| ||||||||||    |||||||| |||||||||||| |||||||    
T  36594437 gaagacatttcagatgacatctatgggaaagccttggaaaaatttaaggatcctgattggagggaaatgtttatcgctatgtcta 36594353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 21117141 - 21116910
Alignment:
Q  19 agtgcgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttat 114  Q
    |||| |||| ||||||||||| |||||||||||||||||||||| | |||| |||||| ||||||||||||||||||     |||||||| |||||||||    
T  21117141 agtgtgtggctgctctcgatggactagaagacatttcagatgatacctatgaaaaagctttggaaaagtttaaggattctgattggagggaaatgtttat 21117042  T
Q  115 cgccatgtcta----gaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatactt---atcttt 207  Q
    ||||||| |||    |||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||||||    
T  21117041 cgccatgcctaatgagaggaagcgtggatggatgcttaggctctaaggatataacctgtatttgtttaggttctagtgatgagacatacttatcatcttt 21116942  T
Q  208 agtgatcagacatacttatcttagtatttgtt 239  Q
    ||||||||||||||||||||||||||||||||    
T  21116941 agtgatcagacatacttatcttagtatttgtt 21116910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 10626315 - 10626087
Alignment:
Q  19 agtgcgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttat 114  Q
    |||| |||| ||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||||||||||||     |||||||  |||||||||    
T  10626315 agtgtgtggctgctctcgatggactagaagacatttcagatgatacctatggaaaagctttggaaaagtttaaggattctgattggaggtaaatgtttat 10626216  T
Q  115 cgccatgtcta----gaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatactt---atcttt 207  Q
    ||||||| |||    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||||||    
T  10626215 cgccatgcctaatgagaggaagcgtggatggatacttaggctctaaggatataacctgtatttgtttaggttctagtgatgagacatacttatcatcttt 10626116  T
Q  208 agtgatcagacatacttatcttagtattt 236  Q
    ||||||  |||||||||||||||||||||    
T  10626115 agtgatttgacatacttatcttagtattt 10626087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 280 - 425
Target Start/End: Complemental strand, 21116907 - 21116765
Alignment:
Q  280 acaaatgcttatgtgtttatttacatgatgttgctgaagaattgatattgataaagccttttattttcctcttattcgagtatcgtgtttttaagtttta 379  Q
    |||| ||||| |||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  21116907 acaattgcttgtgtgtttatttacatgatgttgctga-gaattgatattg-taaaaccttttattttcctcttat-cgagtatcgtgtttttaagtttta 21116811  T
Q  380 ttgttactttgtatgacaggttataactagaaccgatattgaaaaa 425  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||    
T  21116810 ttgttactttgtatgacaggttataactataactgatattgaaaaa 21116765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 280 - 425
Target Start/End: Complemental strand, 10626081 - 10625939
Alignment:
Q  280 acaaatgcttatgtgtttatttacatgatgttgctgaagaattgatattgataaagccttttattttcctcttattcgagtatcgtgtttttaagtttta 379  Q
    |||| ||||| ||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  10626081 acaattgcttgtgtgtttatttacatgatgtttctga-gaattgatattg-taaaaccttttattttcctcttat-cgagtatcgtgtttttaagtttta 10625985  T
Q  380 ttgttactttgtatgacaggttataactagaaccgatattgaaaaa 425  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||    
T  10625984 ttgttactttgtatgacaggttataactataactgatattgaaaaa 10625939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 19512153 - 19512069
Alignment:
Q  45 gaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttatcgccatgtcta 125  Q
    |||||||||||||||||    ||||| |||||||||||||| ||||||||||    |||||||| |||||||||||| |||||||    
T  19512153 gaagacatttcagatgacatctatgggaaagccttggaaaaatttaaggatcctgattggagggaaatgtttatcgctatgtcta 19512069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 125
Target Start/End: Original strand, 35339057 - 35339139
Alignment:
Q  47 agacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttatcgccatgtcta 125  Q
    |||||||||||||||    || || ||||||||||| |||||||||||||    |||||||| ||||||| ||||||||||||    
T  35339057 agacatttcagatgacatctacgggaaagccttggagaagtttaaggatccagattggagggaaatgtttgtcgccatgtcta 35339139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 45805267 - 45805179
Alignment:
Q  36 gatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttatcgccat 120  Q
    ||||||||||||||||||||| ||||||| |||| |||| |||||||||||||||||||||    |||||||| ||||||||| |||||    
T  45805267 gatgaactagaagacatttcacatgatgcctatgaaaaaaccttggaaaagtttaaggatcctgattggagggaaatgtttatggccat 45805179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 42599941 - 42599855
Alignment:
Q  43 tagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttatcgccatgtcta 125  Q
    |||||||||||||||||||    |  ||||||||||||||||||||||||||||    |||||||| ||||||||| ||||||||||    
T  42599941 tagaagacatttcagatgacatcttcggaaaagccttggaaaagtttaaggatcctgattggagggaaatgtttatggccatgtcta 42599855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University