View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2950_low_6 (Length: 384)

Name: NF2950_low_6
Description: NF2950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2950_low_6
NF2950_low_6
[»] chr1 (8 HSPs)
chr1 (22-115)||(43842450-43842541)
chr1 (135-212)||(52652803-52652880)
chr1 (292-340)||(43842233-43842281)
chr1 (292-340)||(43842013-43842061)
chr1 (141-181)||(43842384-43842424)
chr1 (135-180)||(5851713-5851758)
chr1 (157-212)||(5609983-5610039)
chr1 (135-210)||(43810925-43811001)
[»] chr3 (2 HSPs)
chr3 (135-212)||(16973079-16973157)
chr3 (149-212)||(34145718-34145782)
[»] scaffold0031 (1 HSPs)
scaffold0031 (136-214)||(77336-77415)
[»] chr5 (4 HSPs)
chr5 (138-213)||(10161373-10161448)
chr5 (69-107)||(33584541-33584579)
chr5 (69-114)||(10161304-10161349)
chr5 (136-212)||(26916890-26916966)
[»] chr7 (4 HSPs)
chr7 (135-212)||(32651957-32652035)
chr7 (157-212)||(38198320-38198377)
chr7 (69-114)||(32651891-32651936)
chr7 (140-181)||(7174210-7174251)
[»] chr8 (4 HSPs)
chr8 (136-212)||(14847551-14847627)
chr8 (135-182)||(35063689-35063736)
chr8 (69-114)||(34422894-34422939)
chr8 (69-109)||(5493289-5493329)
[»] chr4 (4 HSPs)
chr4 (135-170)||(31484-31519)
chr4 (135-212)||(38380244-38380322)
chr4 (69-109)||(2321873-2321913)
chr4 (135-207)||(33632793-33632865)


Alignment Details
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 43842541 - 43842450
Alignment:
Q  22 tagtatatgataatgatattttagggtcttgttaactaatgtc-gcaatagttaaggaagcaagaaaagaaatatttgcattgaaaacaccattc 115  Q
    ||||||||||||||   ||||||||||||||||||||| | || ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43842541 tagtatatgataat---attttagggtcttgttaactagtatccgcactagttaaggaagcaagaaaagaaatatttgcattgaaaacaccattc 43842450  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 52652880 - 52652803
Alignment:
Q  135 gactacacaagttccaagatatttatactatatttgatttccttaaccggtgtccaggggcactagttaacattttcc 212  Q
    ||||||||||||||||||||| || ||||||||||| ||||||||||  ||| || ||||||||||||||||||||||    
T  52652880 gactacacaagttccaagatacttgtactatatttggtttccttaactagtgccccggggcactagttaacattttcc 52652803  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 43842281 - 43842233
Alignment:
Q  292 tgtagaaaggagtcaccgtcattaagaatgaaatcaagttttgctaaaa 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43842281 tgtagaaaggagtcaccgtcattaagaatgaaatcaagttttgctaaaa 43842233  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 43842061 - 43842013
Alignment:
Q  292 tgtagaaaggagtcaccgtcattaagaatgaaatcaagttttgctaaaa 340  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  43842061 tgtagaaaggaatcaacgtcattaagaatgaaatcaagttttgctaaaa 43842013  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 43842424 - 43842384
Alignment:
Q  141 acaagttccaagatatttatactatatttgatttccttaac 181  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  43842424 acaagttccaagatacttatattatatttgatttccttaac 43842384  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 5851758 - 5851713
Alignment:
Q  135 gactacacaagttccaagatatttatactatatttgatttccttaa 180  Q
    |||| ||||||||| || ||| ||||||||||||||||||||||||    
T  5851758 gactgcacaagttctaaaatacttatactatatttgatttccttaa 5851713  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 5609983 - 5610039
Alignment:
Q  157 ttatactatatttgatttccttaaccggtg-tccaggggcactagttaacattttcc 212  Q
    |||||||||||||| ||| ||||||  ||| ||| ||||||||||||||||||||||    
T  5609983 ttatactatatttggttttcttaacaagtgctcctggggcactagttaacattttcc 5610039  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 43810925 - 43811001
Alignment:
Q  135 gactacacaagttccaagatatttatactatatttgatttccttaaccggtg-tccaggggcactagttaacatttt 210  Q
    |||||||||||||  |||||| | |||||||||||| ||| ||||||  |||  ||||||||||| |||||||||||    
T  43810925 gactacacaagttttaagatactcatactatatttggttttcttaacgagtgccccaggggcactggttaacatttt 43811001  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 16973079 - 16973157
Alignment:
Q  135 gactacacaagttccaagatatttatactatatttgatttccttaaccggtgt-ccaggggcactagttaacattttcc 212  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||  |||| || |||||||| |||||||||||||    
T  16973079 gactacacaagttccaagatacttatactatatttggtttccttaactagtgtcccgggggcactggttaacattttcc 16973157  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 34145718 - 34145782
Alignment:
Q  149 caagatatttatactatatttgatttccttaaccggtg-tccaggggcactagttaacattttcc 212  Q
    ||||||||| |||||||||||||||| ||||| |  || |||||||||||| ||||| |||||||    
T  34145718 caagatattcatactatatttgattttcttaaacaatgctccaggggcacttgttaatattttcc 34145782  T

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Target: scaffold0031 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 77415 - 77336
Alignment:
Q  136 actacacaagttccaagatatttatactatatttgatttccttaaccggtgtccagg-ggcactagttaacattttccaa 214  Q
    |||||||||||| ||||||| | |||||||||||||||||||||||| ||| || || |||||| |||||||||||||||    
T  77415 actacacaagtttcaagatactcatactatatttgatttccttaaccagtgccccggaggcactcgttaacattttccaa 77336  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 10161373 - 10161448
Alignment:
Q  138 tacacaagttccaagatatttatactatatttgatttccttaaccggtgtccaggggcactagttaacattttcca 213  Q
    ||||||||||||||| || |||||||||||||| ||||||||||  ||| || ||||| |||||||||||||||||    
T  10161373 tacacaagttccaaggtacttatactatatttggtttccttaactagtgccctggggcgctagttaacattttcca 10161448  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 33584579 - 33584541
Alignment:
Q  69 tagttaaggaagcaagaaaagaaatatttgcattgaaaa 107  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  33584579 tagttaaggaaacaagaaaagaaatatttgcattgaaaa 33584541  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 10161304 - 10161349
Alignment:
Q  69 tagttaaggaagcaagaaaagaaatatttgcattgaaaacaccatt 114  Q
    ||||||||||| ||| ||| ||||||||||||||||||||| ||||    
T  10161304 tagttaaggaaacaaaaaaggaaatatttgcattgaaaacatcatt 10161349  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 26916890 - 26916966
Alignment:
Q  136 actacacaagttccaagatatttatactatatttgatttccttaaccggtgtccaggggcactagttaacattttcc 212  Q
    |||||||||||| |||  || ||||| |||||||| ||||||| ||  ||||||  || ||||||||||||||||||    
T  26916890 actacacaagtttcaaagtacttatattatatttggtttccttgacgagtgtcccaggacactagttaacattttcc 26916966  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 32651957 - 32652035
Alignment:
Q  135 gactacacaagttccaagatatttatactatatttgatttccttaaccggtgtccaggg-gcactagttaacattttcc 212  Q
    ||||||||||||| ||||| | |||||||||||||| |||||||||||||||||| ||| |||||  ||||||||||||    
T  32651957 gactacacaagtttcaagacacttatactatatttggtttccttaaccggtgtcccgggagcacttattaacattttcc 32652035  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 38198320 - 38198377
Alignment:
Q  157 ttatactatatttgatttccttaaccggtgtccag--gggcactagttaacattttcc 212  Q
    |||||||||||||||||||||||||| ||| || |  |||||||||||||||||||||    
T  38198320 ttatactatatttgatttccttaaccagtgcccggccgggcactagttaacattttcc 38198377  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 32651891 - 32651936
Alignment:
Q  69 tagttaaggaagcaagaaaagaaatatttgcattgaaaacaccatt 114  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  32651891 tagttaaggaaacaaaaaaagaaatatttgcattgaaaacatcatt 32651936  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 7174210 - 7174251
Alignment:
Q  140 cacaagttccaagatatttatactatatttgatttccttaac 181  Q
    |||||||||||||||||| |||||||||||| ||||| ||||    
T  7174210 cacaagttccaagatattcatactatatttggtttccataac 7174251  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 14847627 - 14847551
Alignment:
Q  136 actacacaagttccaagatatttatactatatttgatttccttaaccggtgtccaggggcactagttaacattttcc 212  Q
    ||||||||||||| |||| | |||||||||||||| ||||||||||| |||||| |||  ||||||||||| |||||    
T  14847627 actacacaagttctaagacacttatactatatttggtttccttaaccagtgtcccgggcgactagttaacaatttcc 14847551  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 35063736 - 35063689
Alignment:
Q  135 gactacacaagttccaagatatttatactatatttgatttccttaacc 182  Q
    |||||||||||||||||| || |||||||||||||| |||||||||||    
T  35063736 gactacacaagttccaaggtacttatactatatttggtttccttaacc 35063689  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 34422939 - 34422894
Alignment:
Q  69 tagttaaggaagcaagaaaagaaatatttgcattgaaaacaccatt 114  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  34422939 tagttaaggaaacaaaaaaagaaatatttgcattgaaaacatcatt 34422894  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 5493329 - 5493289
Alignment:
Q  69 tagttaaggaagcaagaaaagaaatatttgcattgaaaaca 109  Q
    ||||||||||| ||| ||| |||||||||||||||||||||    
T  5493329 tagttaaggaaacaaaaaaggaaatatttgcattgaaaaca 5493289  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 170
Target Start/End: Complemental strand, 31519 - 31484
Alignment:
Q  135 gactacacaagttccaagatatttatactatatttg 170  Q
    |||||||||||||||||||||||| |||||||||||    
T  31519 gactacacaagttccaagatatttttactatatttg 31484  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 38380322 - 38380244
Alignment:
Q  135 gactacacaagttccaagatatttatactatatttgatttccttaaccggtgtccagggg-cactagttaacattttcc 212  Q
    |||||||||| ||||||  || |||||||||||||| ||||||||||  |||||| ||||  ||||||||| |||||||    
T  38380322 gactacacaaattccaaagtacttatactatatttggtttccttaactagtgtcccggggatactagttaatattttcc 38380244  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 2321913 - 2321873
Alignment:
Q  69 tagttaaggaagcaagaaaagaaatatttgcattgaaaaca 109  Q
    ||||||||||| ||| | |||||||||||||||||||||||    
T  2321913 tagttaaggaaacaaaagaagaaatatttgcattgaaaaca 2321873  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 33632865 - 33632793
Alignment:
Q  135 gactacacaagttccaagatatttatactatatttgatttccttaaccggtgtccaggggcactagttaacat 207  Q
    |||| ||||| || |||| || |||||||||||||| ||||||||||| ||  || ||| |||||||||||||    
T  33632865 gactgcacaaatttcaaggtacttatactatatttggtttccttaaccagttccccgggacactagttaacat 33632793  T

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