View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2951_high_1 (Length: 690)
Name: NF2951_high_1
Description: NF2951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2951_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 165 - 579
Target Start/End: Complemental strand, 29083575 - 29083162
Alignment:
| Q |
165 |
taggtaataggtttaaacttgtttatgcaaaacatttccctcggcagtagtacttcaaatcactccctttgacttatgatcagtgactttagaacattat |
264 |
Q |
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| T |
29083575 |
taggtaataggtt-aaacttgtttatgcaaaacatttccttcggcagtagtacttcaaaccactccctttgacttatgatcagtgactttagaacattat |
29083477 |
T |
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| Q |
265 |
tgaactttaactatgtgaggtaaagaataacttttcaaccgtaaatttgaccatgactttct-----------------ttcctgttgagagattatccc |
347 |
Q |
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| T |
29083476 |
tgaactttaactatgtgaggtaaagaataacttttcaaccgtacatttgaccatgactttctttcattattatcaattcttcccgttgggagattatccc |
29083377 |
T |
|
| Q |
348 |
cacttcacaaaacttctggagcaaagctggtataatttggttggtaatagtattagttttttcagctaacaccgacatgtaatactaataataacacatt |
447 |
Q |
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| T |
29083376 |
cacttcacaaaacttctggagtaaagctggtataatttggttg------gtattagttttttcagctaacaccgacatgtaatactaataa--------- |
29083292 |
T |
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| Q |
448 |
tgaaacttcttgacacattttcctttttaaattccatactgcagtaattgtagcacannnnnnncattggcacaatgtcaaaattgttgctttgtgagtt |
547 |
Q |
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| T |
29083291 |
--aaacttcttgacacattttcctttttaaattccatactgcagtaattgtagcacatttttttcattggcacaatgtcaaaattgttgctttgtgagtt |
29083194 |
T |
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| Q |
548 |
gtgctcacgggtcacatcttcacaagctgtcc |
579 |
Q |
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| T |
29083193 |
gtgctcacgggtcacatcttcacaagctgtcc |
29083162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 29083742 - 29083603
Alignment:
| Q |
18 |
gaaatctatatgaaaatcttgatcaaaggaaatctatatggaaacctatgacaaagagaatcatgtcaggaaatggggattcgagattgcaaaaaggtgg |
117 |
Q |
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| T |
29083742 |
gaaatctatatgaaaatctttatcaaag-aaatctatatggaaacctatgacaa-gaaaatcatgtcaggaaatggggattcgagattgcaaaaaggtgg |
29083645 |
T |
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| Q |
118 |
caggttacataggataatcctataaagaagttacctatatga |
159 |
Q |
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| T |
29083644 |
caggttacataggataatcctataaagaagttacctatatga |
29083603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 624 - 689
Target Start/End: Complemental strand, 29083117 - 29083052
Alignment:
| Q |
624 |
attgactgtagatcattttgaaaactttcagatcttaaagtacacttctccaatttcatagtacca |
689 |
Q |
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| T |
29083117 |
attgattgtagatcattttgaaaacttacagatcttaaagtacacttctccaatttcatagtacca |
29083052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 29091066 - 29090939
Alignment:
| Q |
17 |
agaaatctatatgaaaatcttgatcaaaggaaatctatatggaaacctatgacaaagagaatcatgtcaggaaatggggattcgagattgcaaaaaggtg |
116 |
Q |
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| T |
29091066 |
agaaatctatctgaatatctttatcaaag-aaatctatatagaaacctatgacaa-gagaatcatgtcaggaaat-gggattcgaggtttcaaaaagttg |
29090970 |
T |
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| Q |
117 |
gcaggttacataggataatcctataaagaagttacctat |
155 |
Q |
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| T |
29090969 |
g--------ttaggataatcctataaagaagtgacctat |
29090939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 29086731 - 29086675
Alignment:
| Q |
262 |
tattgaactttaactatgtgaggtaaagaataacttttcaaccgtaaatttgaccat |
318 |
Q |
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| T |
29086731 |
tattgaacttttattatatcaggtaaagaataacttttcaaccggaaaattaaccat |
29086675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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