View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2951_high_17 (Length: 277)
Name: NF2951_high_17
Description: NF2951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2951_high_17 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 277
Target Start/End: Complemental strand, 43257654 - 43257386
Alignment:
| Q |
9 |
gacatcatcatcacatgcagtcttccacaagaacttccacgttgcttgcatgcacaaacttgaaagtagtgacttagagttcttcatatcttcctccatt |
108 |
Q |
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| T |
43257654 |
gacatcatcatcacatgcagtcttccacaagaacttccacgttgcttgcatgcacaaacttgaaagtagtgacttagagttcttcatatcttcctccatt |
43257555 |
T |
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| Q |
109 |
tatctatcattcattcttaaccatctactacattcttgaagaagaaaaaacttgttcctagaggcaacaaagaagagaaaaacatggctacacaaattct |
208 |
Q |
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| T |
43257554 |
tatctatcattcattcttaaccatctactacattcttgaagaagaaaaaacttgttcctagaggcaacaaagaagggaaaaacatggctacacaagttct |
43257455 |
T |
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| Q |
209 |
attgtcgtcatcatctcatacttttgcagctgaagctgtaagacatagttttggagcaagatcactccc |
277 |
Q |
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| T |
43257454 |
attgtcgtcgtcatctcttacttttgcagctgaagctgtaagacagagttttggagcaagatcactccc |
43257386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 109 - 277
Target Start/End: Complemental strand, 43261150 - 43260982
Alignment:
| Q |
109 |
tatctatcattcattcttaaccatctactacattcttgaagaagaaaaaacttgttcctagaggcaacaaagaagagaaaaacatggctacacaaattct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| |
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| T |
43261150 |
tatctatcattcattcttaaccatctactacattcttgaagaagaaaaaacttgttcctagaggcaacaaaggagggaaaaacatggctacacaagctct |
43261051 |
T |
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| Q |
209 |
attgtcgtcatcatctcatacttttgcagctgaagctgtaagacatagttttggagcaagatcactccc |
277 |
Q |
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| T |
43261050 |
agtgtcgtcatcatctcttacttttgcagctgaagctgtgagacagagttttggagcaagatcactccc |
43260982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 109
Target Start/End: Complemental strand, 43261197 - 43261169
Alignment:
| Q |
81 |
cttagagttcttcatatcttcctccattt |
109 |
Q |
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| T |
43261197 |
cttagagttcttcatatcttcctccattt |
43261169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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