View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2951_high_2 (Length: 562)

Name: NF2951_high_2
Description: NF2951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2951_high_2
NF2951_high_2
[»] chr7 (12 HSPs)
chr7 (18-531)||(21200189-21200701)
chr7 (18-562)||(21194942-21195486)
chr7 (145-415)||(24284835-24285105)
chr7 (203-326)||(24231720-24231843)
chr7 (233-325)||(24238962-24239054)
chr7 (165-345)||(24145298-24145478)
chr7 (239-343)||(24121199-24121303)
chr7 (234-323)||(24158649-24158738)
chr7 (165-345)||(24137562-24137742)
chr7 (203-347)||(3494030-3494174)
chr7 (165-344)||(24126232-24126411)
chr7 (165-214)||(24160498-24160547)
[»] chr2 (2 HSPs)
chr2 (152-347)||(10989560-10989757)
chr2 (20-89)||(10989422-10989491)
[»] chr1 (3 HSPs)
chr1 (180-366)||(3151898-3152084)
chr1 (219-345)||(15381068-15381194)
chr1 (22-81)||(15380859-15380918)


Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 18 - 531
Target Start/End: Original strand, 21200189 - 21200701
Alignment:
Q  18 catagatattctgaagttgtcattggtctcaaagacccctttgacagacttcatctttaaaaagaaatattttgaagtggccaatggtctcaaatacccc 117  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21200189 catagatattctgaagttgtcatttgtctcaaagacccctttgacagacttcatctttaaaaagaaatattt-gaagtggccaatggtctcaaatacccc 21200287  T
Q  118 atgcctaagattggaaacgggtcatcgaaagggggtaggcagatatctgtgaaagtagtgagaagaaaatcaactggagagattttgtttgctgaagcaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21200288 atgcctaagattggaaacgggtcatcgaaagggggtaggcagatatctgtgaaagtagtgagaagaaaatcaactggagagattttgtttgctgaagcaa 21200387  T
Q  218 gagatgattttattaactttattttcagttttctaactttccctttgggaggagtgttgcatatgcttcaaggtttctcttctttaaactgcattgataa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21200388 gagatgattttattaactttattttcagttttctaactttccctttgggaggagtgttgcatatgcttcaaggtttctcttctttaaactgcattgataa 21200487  T
Q  318 tttatacaaaagcgtgaccgagttgagtcccgaaacgtatttaatctcaaaccatctcaaagagaaactaattaaccctcccattgctgcacaatttggg 417  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21200488 tttatacaaaagcgtgaccgagttgagccccgaaacgtatttaatctcaaaccatctcaaagagaaactaattaaccctcccattgctgcacaatttggg 21200587  T
Q  418 cttgccaaccaaataattccaattggagtagcttccccacctttttatgattgtcattcttacactttaaaaggtccgtatattcgtgcactaactgctt 517  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||| ||| ||||||||||||     
T  21200588 cttgacaaccaaataattccaattggagtagcttccccacctttttatgattgtcattcttacattttaaaaggtcaatatactcgcgcactaactgcta 21200687  T
Q  518 cgcacatgcataat 531  Q
     |||||||| ||||    
T  21200688 tgcacatgcgtaat 21200701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 18 - 562
Target Start/End: Original strand, 21194942 - 21195486
Alignment:
Q  18 catagatattctgaagttgtcattggtctcaaagacccctttgacagacttcatctttaaaaagaaatattttgaagtggccaatggtctcaaatacccc 117  Q
    |||||||||||| |||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| | ||||||||||||| | ||     
T  21194942 catagatattcttaagttgtccttggtctcaaagacctctttgacagacctcatctttaaaaagaaatattctgaagttgtcaatggtctcaaagatcca 21195041  T
Q  118 atgcctaagattggaaacgggtcatcgaaagggggtaggcagatatctgtgaaagtagtgagaagaaaatcaactggagagattttgtttgctgaagcaa 217  Q
    ||   |||||||||||| | | ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  21195042 atatgtaagattggaaaagcgacatccgaaggaggtaggcagatatctgtgaaagtagtgagaagaaaatcaactggagatattttgtttgctgaagcag 21195141  T
Q  218 gagatgattttattaactttattttcagttttctaactttccctttgggaggagtgttgcatatgcttcaaggtttctcttctttaaactgcattgataa 317  Q
    | |||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||| |||||||||||||| ||||| |||| |||||    
T  21195142 gcgatgattttattaactttattttcagttttctaactctccccttaggaggagtgttgcatatgcttgaaggtttctcttctctaaacagcatcgataa 21195241  T
Q  318 tttatacaaaagcgtgaccgagttgagtcccgaaacgtatttaatctcaaaccatctcaaagagaaactaattaaccctcccattgctgcacaatttggg 417  Q
    ||||||||||||| |||| ||||||||| |||||   ||||||||||  || ||||| |||||||| ||||||| |||||||||||||||||||||||||    
T  21195242 tttatacaaaagcttgactgagttgagttccgaatgttatttaatcttgaaacatcttaaagagaagctaattagccctcccattgctgcacaatttggg 21195341  T
Q  418 cttgccaaccaaataattccaattggagtagcttccccacctttttatgattgtcattcttacactttaaaaggtccgtatattcgtgcactaactgctt 517  Q
     ||| ||||||||||||||||||||||||||||||| ||||| | ||| |||||||||| |||| |   |  |||| ||||| ||| |||||||||||||    
T  21195342 tttgacaaccaaataattccaattggagtagcttcctcacctgtctattattgtcattcgtacattcatattggtcagtatactcgcgcactaactgctt 21195441  T
Q  518 cgcacatgcataatgtccattatcaagctgaaaagtatgtacttt 562  Q
    |  ||| ||||| ||||| |||||  |||||||||| ||||||||    
T  21195442 caaacacgcatattgtccgttatcctgctgaaaagtttgtacttt 21195486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 145 - 415
Target Start/End: Original strand, 24284835 - 24285105
Alignment:
Q  145 aaagggggtaggcagatatctgtgaaagtagtgagaagaaaatcaactggagagattttgtttgctgaagcaagagatgattttattaactttattttca 244  Q
    |||| |||||||||||| || ||||||||| ||  |||||||||||| |||||||||||||||| ||||| | | |  ||||||||| |||||||||| |    
T  24284835 aaagagggtaggcagatgtcagtgaaagtactgcaaagaaaatcaaccggagagattttgtttgttgaaggaggggtagattttattgactttattttta 24284934  T
Q  245 gttttctaactttccctttgggaggagtgttgcatatgcttcaaggtttctcttctttaaactgcattgataatttatacaaaagcgtgaccgagttgag 344  Q
    |||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| || || |||||    
T  24284935 gttttctaaccttccccttggggggagtgttgcatatgcttcaaggattctcttctttaagctgcattgataatttatataaaagcgtaactgaattgag 24285034  T
Q  345 tcccgaaacgtatttaatctcaaaccatctcaaagagaaactaattaaccctcccattgctgcacaatttg 415  Q
    ||| || || ||| |||  ||| |  | || ||||| ||||||| ||| ||||||||||| ||||||||||    
T  24285035 tccagatacatatctaacgtcacaagaacttaaagataaactaactaagcctcccattgcagcacaatttg 24285105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 326
Target Start/End: Complemental strand, 24231843 - 24231720
Alignment:
Q  203 tgtttgctgaagcaagagatgattttattaactttattttcagttttctaactttccctttgggaggagtgttgcatatgcttcaaggtttctcttcttt 302  Q
    |||||| ||||||| |||||||||||||| ||||| |||| ||||||||||| || || || |||||||||||||||||||||||||| || || |||||    
T  24231843 tgtttgttgaagcaggagatgattttattgactttgtttttagttttctaacatttcccttaggaggagtgttgcatatgcttcaaggattttcgtcttt 24231744  T
Q  303 aaactgcattgataatttatacaa 326  Q
    || | |||||||||| || |||||    
T  24231743 aagcagcattgataacttgtacaa 24231720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 233 - 325
Target Start/End: Original strand, 24238962 - 24239054
Alignment:
Q  233 actttattttcagttttctaactttccctttgggaggagtgttgcatatgcttcaaggtttctcttctttaaactgcattgataatttataca 325  Q
    ||||| |||| |||||||| |||||||| || |||||||||||||||||||||||||| || |||||| ||| ||||||||||||||||||||    
T  24238962 actttcttttgagttttctcactttccccttaggaggagtgttgcatatgcttcaaggattttcttctataagctgcattgataatttataca 24239054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 165 - 345
Target Start/End: Complemental strand, 24145478 - 24145298
Alignment:
Q  165 tgtgaaagtagtgagaagaaaatcaactggagagattttgtttgctgaagcaagagatgattttattaactttattttcagttttctaactttccctttg 264  Q
    |||||||||| ||||||||||||||| |  | |||||||||||| |||||||   || |||||   | ||||  |||| |||||||| |||||||| ||     
T  24145478 tgtgaaagtactgagaagaaaatcaaataaacagattttgtttgttgaagcagaggaagatttcgctgacttcgtttttagttttctcactttcccctta 24145379  T
Q  265 ggaggagtgttgcatatgcttcaaggtttctcttctttaaactgcattgataatttatacaaaagcgtgaccgagttgagt 345  Q
    |||| |||||||||||  |  ||||| ||||||| | ||| ||||||||||||||||||||| |||||||| || ||||||    
T  24145378 ggagcagtgttgcatactcgccaaggattctcttttgtaagctgcattgataatttatacaagagcgtgactgaattgagt 24145298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 239 - 343
Target Start/End: Complemental strand, 24121303 - 24121199
Alignment:
Q  239 ttttcagttttctaactttccctttgggaggagtgttgcatatgcttcaaggtttctcttctttaaactgcattgataatttatacaaaagcgtgaccga 338  Q
    |||| ||||||||||| || ||  |||||||||||||||| |||||  |||| ||||||||||||| ||||||||||| |||||| |||||| |||| ||    
T  24121303 tttttagttttctaacatttcccatgggaggagtgttgcaaatgctagaaggattctcttctttaagctgcattgatattttatataaaagcatgactga 24121204  T
Q  339 gttga 343  Q
    |||||    
T  24121203 gttga 24121199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 24158738 - 24158649
Alignment:
Q  234 ctttattttcagttttctaactttccctttgggaggagtgttgcatatgcttcaaggtttctcttctttaaactgcattgataatttata 323  Q
    |||| ||||||||||||| ||||| ||| | |||| ||||||||| |||||  |||| ||||||||||||||||||||||||| ||||||    
T  24158738 ctttcttttcagttttctgacttttcctctaggagcagtgttgcaaatgctagaaggattctcttctttaaactgcattgatattttata 24158649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 345
Target Start/End: Complemental strand, 24137742 - 24137562
Alignment:
Q  165 tgtgaaagtagtgagaagaaaatcaactggagagattttgtttgctgaagcaagagatgattttattaactttattttcagttttctaactttccctttg 264  Q
    ||||| |||| ||||||||||||||| |  | |||||||||||| |||||||   |||||||||  | | ||  |||| |||||||| ||||| ||||||    
T  24137742 tgtgagagtactgagaagaaaatcaaataaacagattttgtttgttgaagcagatgatgattttgctgatttggtttttagttttctcacttttcctttg 24137643  T
Q  265 ggaggagtgttgcatatgcttcaaggtttctcttctttaaactgcattgataatttatacaaaagcgtgaccgagttgagt 345  Q
    |||   ||||||||||| || ||||| ||||||| | ||| |||| ||||||||||||| || || ||||| || ||||||    
T  24137642 ggatcggtgttgcatattctccaaggattctcttttataagctgctttgataatttatataagagtgtgactgaattgagt 24137562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 203 - 347
Target Start/End: Complemental strand, 3494174 - 3494030
Alignment:
Q  203 tgtttgctgaagcaagagatgattttattaactttattttcagttttctaactttccctttgggaggagtgttgcatatgcttcaaggtttctcttcttt 302  Q
    |||||| ||||||  | ||||||||| || ||||| |||  ||||||||||| ||||| || ||| | || || || ||||||||||| ||||| |||||    
T  3494174 tgtttgttgaagccggggatgattttgttgactttgtttatagttttctaaccttccccttaggacgggttttacacatgcttcaaggattctcctcttt 3494075  T
Q  303 aaactgcattgataatttatacaaaagcgtgaccgagttgagtcc 347  Q
    || |||||||||||| |||||||| ||| ||  ||| ||||||||    
T  3494074 aagctgcattgataacttatacaagagcttgtgcgacttgagtcc 3494030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 344
Target Start/End: Complemental strand, 24126411 - 24126232
Alignment:
Q  165 tgtgaaagtagtgagaagaaaatcaactggagagattttgtttgctgaagcaagagatgattttattaactttattttcagttttctaactttccctttg 264  Q
    |||||||||||||||||||||||||| |    |||| ||||||  |||||||   || ||||||  | | ||| |||| |||||||| || || || |||    
T  24126411 tgtgaaagtagtgagaagaaaatcaaataagcagatcttgtttattgaagcagaggaagattttgctgattttgtttttagttttctcacatttcccttg 24126312  T
Q  265 ggaggagtgttgcatatgcttcaaggtttctcttctttaaactgcattgataatttatacaaaagcgtgaccgagttgag 344  Q
    ||||||||||| | |||||   |||| |||||||| |||| |||||||||||||||||| || || ||||| || |||||    
T  24126311 ggaggagtgttacttatgcacgaaggattctcttccttaagctgcattgataatttatataagagtgtgactgaattgag 24126232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 24160547 - 24160498
Alignment:
Q  165 tgtgaaagtagtgagaagaaaatcaactggagagattttgtttgctgaag 214  Q
    |||||||||||||||||||||||||| || | |||||||||||| |||||    
T  24160547 tgtgaaagtagtgagaagaaaatcaaatgaacagattttgtttgttgaag 24160498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 152 - 347
Target Start/End: Original strand, 10989560 - 10989757
Alignment:
Q  152 gtaggcagatatctgtgaaagtagtgagaagaaaatcaactggagagattttgtttgctgaagcaagagatgattttattaactttattttcagttttct 251  Q
    ||||||||||   |||||||||| ||  ||||||||||||||||||| ||||||||| ||||| | | |  ||||||||| ||||| |||||||||||||    
T  10989560 gtaggcagatgattgtgaaagtattgcaaagaaaatcaactggagagtttttgtttgttgaaggaggggtagattttattgactttcttttcagttttct 10989659  T
Q  252 aac-tttccctt-tgggaggagtgttgcatatgcttcaaggtttctcttctttaaactgcattgataatttatacaaaagcgtgaccgagttgagtcc 347  Q
     || |||||||| | ||||||||||||  |||||||||||| ||||||||||||| |||||||||||||||||||| |||| || | || ||||||||    
T  10989660 tacatttcccttataggaggagtgttgtgtatgcttcaaggattctcttctttaagctgcattgataatttatacagaagcctggctgaattgagtcc 10989757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 10989422 - 10989491
Alignment:
Q  20 tagatattctgaagttgtcattggtctcaaagacccctttgacagacttcatctttaaaaagaaatattt 89  Q
    |||||||||| |||||||||||||| ||||||||||| ||||||||||| || || || |||||| ||||    
T  10989422 tagatattctcaagttgtcattggtttcaaagacccccttgacagactttattttgaagaagaaacattt 10989491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 180 - 366
Target Start/End: Original strand, 3151898 - 3152084
Alignment:
Q  180 aagaaaatcaactggagagattttgtttgctgaagcaagagatgattttattaactttattttcagttttctaactttccctttgggaggagtgttgcat 279  Q
    ||||||||||||| ||||| || | ||| | ||||||  ||| ||||||||| ||||| ||||||||||||| || || |||||||||| |||  |||||    
T  3151898 aagaaaatcaactagagagtttctatttaccgaagcacaagaagattttattgactttgttttcagttttctcaccttacctttgggagcagtagtgcat 3151997  T
Q  280 atgcttcaaggtttctcttctttaaactgcattgataatttatacaaaagcgtgaccgagttgagtcccgaaacgtatttaatctca 366  Q
    |||||||||||  ||||||||||||| |||| ||||||||||||||||||| |||| |||||| |||||  ||  ||||||||||||    
T  3151998 atgcttcaaggaatctcttctttaaattgcactgataatttatacaaaagcatgacagagttgtgtcccagaagatatttaatctca 3152084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 219 - 345
Target Start/End: Original strand, 15381068 - 15381194
Alignment:
Q  219 agatgattttattaactttattttcagttttctaactttccctttgggaggagtgttgcatatgcttcaaggtttctcttctttaaactgcattgataat 318  Q
    ||||||||||||  ||||| |||| ||||||||||| ||||| || |||||||||||||||||||||||||| |||||||  |||| |||||||||||||    
T  15381068 agatgattttatcgactttgtttttagttttctaaccttccccttaggaggagtgttgcatatgcttcaaggattctctttgttaagctgcattgataat 15381167  T
Q  319 ttatacaaaagcgtgaccgagttgagt 345  Q
    |||||||||||| |||  |||||||||    
T  15381168 ttatacaaaagcatgattgagttgagt 15381194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 15380859 - 15380918
Alignment:
Q  22 gatattctgaagttgtcattggtctcaaagacccctttgacagacttcatctttaaaaag 81  Q
    |||||||| ||||| || |||||||||||||| |||||||||||||| |||| |||||||    
T  15380859 gatattctaaagttatctttggtctcaaagactcctttgacagactttatctataaaaag 15380918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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