View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2951_high_24 (Length: 250)
Name: NF2951_high_24
Description: NF2951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2951_high_24 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 39955772 - 39955542
Alignment:
| Q |
9 |
gaaaagaagcttttaatgactctgcttgttgtgcacttcacattaagatataggggaaattaaactttttaggcatgaaaaggagagatgggcacgttgg |
108 |
Q |
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| T |
39955772 |
gaaaagaagcttttaatgactctgcttgttgtgcacttcacattaagatataggggaaattaaacttttgaggcatgaaaaggagagatgaatac---ag |
39955676 |
T |
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| Q |
109 |
gttgaatacagtattagacaattaaataaaattgtaacatttggaatattgttaagaatattaattagttctgtaataaagtacactaggattggaagac |
208 |
Q |
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| T |
39955675 |
gt--attagacaaataaataaataaataaaattgtaacatttggaatattgttaagaatattaattagttctgtaataaagtacactaggattgga---- |
39955582 |
T |
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| Q |
209 |
agaacatattttattgatttctaggctactatcataaggcac |
250 |
Q |
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| T |
39955581 |
--aacatattttattgatttctaggctactatcataaggcac |
39955542 |
T |
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