View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2951_high_30 (Length: 227)

Name: NF2951_high_30
Description: NF2951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2951_high_30
NF2951_high_30
[»] chr3 (2 HSPs)
chr3 (1-213)||(30600063-30600274)
chr3 (39-138)||(15085791-15085892)
[»] chr5 (3 HSPs)
chr5 (39-146)||(28096353-28096460)
chr5 (39-107)||(16183592-16183661)
chr5 (50-88)||(10744470-10744508)
[»] chr6 (2 HSPs)
chr6 (50-146)||(26260552-26260647)
chr6 (130-202)||(24207605-24207677)
[»] chr1 (1 HSPs)
chr1 (50-107)||(5955940-5955997)
[»] chr7 (3 HSPs)
chr7 (39-107)||(21924974-21925041)
chr7 (94-193)||(28592281-28592380)
chr7 (39-79)||(44895697-44895737)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 30600063 - 30600274
Alignment:
Q  1 caaaaacaatatactcaactttatctggatctttataataaaccaacatttttctttcaaaagtctctcaattactcaactttctgaaaaatgaagaata 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30600063 caaaaacaatatactcaactttatttggatctttataataaaccaacaattttctttcaaaagtatctcaattactcaactttctgaaaaatgaagaata 30600162  T
Q  101 tgaaaaacgcctggaaagtctatctatatgaaatgtgatattcaatgccccaagtggccttttttcaattaaaatatttttggttttaacatccagaata 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||| ||| ||||||||| ||||||    
T  30600163 tgaaaaacgtctggaaagtctatctatatgaaatgtgatattcaatgccccaattggcaatttttcaattaaaatatttctgg-tttaacatcaagaata 30600261  T
Q  201 tcatagtttcaag 213  Q
    ||| |||||||||    
T  30600262 tcacagtttcaag 30600274  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 15085791 - 15085892
Alignment:
Q  39 taaaccaacatttttctttcaaaagtctctcaattactcaactttct--gaaaaatgaagaatatgaaaaacgcctggaaagtctatctatatgaaatgt 136  Q
    |||||||||  |||||||| ||||||||||  |||| ||||||||||  ||||||  || |||||||||||||||| ||| |||  ||||||  ||||||    
T  15085791 taaaccaaccattttcttttaaaagtctcttcattaatcaactttctgcgaaaaaataataatatgaaaaacgcctagaatgtccgtctatagaaaatgt 15085890  T
Q  137 ga 138  Q
    ||    
T  15085891 ga 15085892  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 146
Target Start/End: Complemental strand, 28096460 - 28096353
Alignment:
Q  39 taaaccaacatttttctttcaaaagtctctcaattactcaactttctgaaaaatgaagaatatgaaaaacgcctggaaagtctatctatatgaaatgtga 138  Q
    |||||||||  ||||||||||||||||||||||| |||||||||| || ||||  ||||||||| |||| | || |||||| | |||||| |||||||||    
T  28096460 taaaccaaccattttctttcaaaagtctctcaataactcaactttttggaaaagtaagaatatgcaaaatgtctagaaagtatgtctataggaaatgtga 28096361  T
Q  139 tattcaat 146  Q
    ||||||||    
T  28096360 tattcaat 28096353  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 16183661 - 16183592
Alignment:
Q  39 taaaccaacatttttctttcaaaagtctctcaattactcaactttctgaaaaatg-aagaatatgaaaaa 107  Q
    |||||||||  ||||||||||||| | || ||||||||||||||| ||||||| | ||||||||||||||    
T  16183661 taaaccaaccattttctttcaaaaatttcccaattactcaactttttgaaaaaggtaagaatatgaaaaa 16183592  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 10744470 - 10744508
Alignment:
Q  50 ttttctttcaaaagtctctcaattactcaactttctgaa 88  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  10744470 ttttctttcaaaagtctctccattactcaacttgctgaa 10744508  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 26260647 - 26260552
Alignment:
Q  50 ttttctttcaaaagtctctcaattactcaactttctgaaaaatgaagaatatgaaaaacgcctggaaagtctatctatatgaaatgtgatattcaat 146  Q
    |||||||| | ||||||||| |||| |||||||| |||||||  |||||||| ||||| |||| ||||||||||||||| ||||||||| |||||||    
T  26260647 ttttctttaataagtctctccattattcaactttttgaaaaaataagaatat-aaaaatgcctagaaagtctatctataagaaatgtgagattcaat 26260552  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 24207677 - 24207605
Alignment:
Q  130 gaaatgtgatattcaatgccccaagtggccttttttcaattaaaatatttttggttttaacatccagaatatc 202  Q
    ||||||||| ||||||| ||| ||  |||| ||||||||||||||| | ||||||| || |||| ||||||||    
T  24207677 gaaatgtgagattcaattccctaataggccctttttcaattaaaatgtctttggttgtagcatcaagaatatc 24207605  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 5955997 - 5955940
Alignment:
Q  50 ttttctttcaaaagtctctcaattactcaactttctgaaaaatgaagaatatgaaaaa 107  Q
    |||||||||||||||||||||||||||||| |||||||||||  | ||||||||||||    
T  5955997 ttttctttcaaaagtctctcaattactcaattttctgaaaaaatacgaatatgaaaaa 5955940  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 21925041 - 21924974
Alignment:
Q  39 taaaccaacatttttctttcaaaagtctctcaattactcaactttctgaaaaatgaagaatatgaaaaa 107  Q
    |||||||||  |||||||||||| ||||| | |||||||||||||||||||||  ||||||||||||||    
T  21925041 taaaccaaccattttctttcaaa-gtctccccattactcaactttctgaaaaagtaagaatatgaaaaa 21924974  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 193
Target Start/End: Original strand, 28592281 - 28592380
Alignment:
Q  94 aagaatatgaaaaacgcctggaaagtctatctatatgaaatgtgatattcaatgccccaagtggccttttttcaattaaaatatttttggttttaacatc 193  Q
    |||||||||||||| || | |||||| | ||| ||  |||||||||||||||| ||| ||   | | ||||||||||||||| | |||||||||||||||    
T  28592281 aagaatatgaaaaatgcttagaaagtttgtctttaaaaaatgtgatattcaattccctaacatgacatttttcaattaaaatgtctttggttttaacatc 28592380  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 44895737 - 44895697
Alignment:
Q  39 taaaccaacatttttctttcaaaagtctctcaattactcaa 79  Q
    |||| ||||| | ||||||||||||||||||||||||||||    
T  44895737 taaatcaacagtcttctttcaaaagtctctcaattactcaa 44895697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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