View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2951_high_9 (Length: 405)
Name: NF2951_high_9
Description: NF2951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2951_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 25 - 383
Target Start/End: Complemental strand, 21201078 - 21200716
Alignment:
| Q |
25 |
cagatgttgagttcatccaagctttcagaatggagagaccctgcaatatgttaacaaaacaaatcaatgtaataatgca----aattaatgaaaatacat |
120 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||| |
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| T |
21201078 |
cagacgttgagttcatccaagctttcagaatggagagaccctgcaatatgttaacaaa-caaatcattgtagtaatgcatgcaaattaatgaaaatacat |
21200980 |
T |
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| Q |
121 |
tgcaaagaatgaaaacgccaatggtcttacgcagtggcgggcttacctccttccgtccaattctaacaaccctttcttccacatcatttagagaaacatt |
220 |
Q |
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| T |
21200979 |
tgcaaagaatgaaaacgccaatggtcttacgcagtggcgggcttacctcctttcgtccaattctaacaaccctttcttccacatcatttagagaaacatt |
21200880 |
T |
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| Q |
221 |
tgaactatttaaatgttatatagcagtgaaggacgacaatggagcgatagtcaagtcagctgtcaccatgtatactgatggtccttttgcgaattctaca |
320 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21200879 |
tgaactatttaaatgtgatatagcagtgaaggacgacaatggagcgatagtcaagtcagctgtcaccatgtatactgatggtccttttgcgaattctcca |
21200780 |
T |
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| Q |
321 |
cgacttgat-gtgtttgaagcagatagcttaggatcaaccaaatttaaaagtacatacttttca |
383 |
Q |
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| T |
21200779 |
cgacttgatggtgtttgaagcagatagcttaggatcaaccaaatttaaaagtacatacctttca |
21200716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 25 - 385
Target Start/End: Complemental strand, 21195827 - 21195468
Alignment:
| Q |
25 |
cagatgttgagttcatccaagctttcagaatggagagaccctgcaatatgttaacaaaacaaatcaatgtaata----atgcaaattaatgaaaatacat |
120 |
Q |
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| T |
21195827 |
cagacgttgaattcatccaagcttttagaatgcagagaccctgcaatatgttaac-aaacaaatcattgtaataattcatgcaaattaatgtaaatatat |
21195729 |
T |
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| Q |
121 |
tgcaaagaatgaaaacgccaatggtcttacgcagtggcgggcttacctccttccgtccaattctaacaaccctttcttccacatcatttagagaaacatt |
220 |
Q |
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| T |
21195728 |
tgcaaagaatgaaaacgccaacgatcttacacaat----ggcttacctccttctgaccaattctaacaaccctttcttccacatcatttagagaaacatt |
21195633 |
T |
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| Q |
221 |
tgaactatttaaatgttatatagcagtgaaggacgacaatggagcgatagtcaagtcagctgtcaccatgtatactgatggtccttttgcgaattctaca |
320 |
Q |
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| T |
21195632 |
tgaactatttaaatgtgatatagcagtgaaggatgacattggagtaatagccaagtcaactgtcaccatgtatactgatggcccttttgcaaattctcca |
21195533 |
T |
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| Q |
321 |
cgacttgatgtgtttgaagcagatagcttaggatcaaccaaatttaaaagtacatacttttcagc |
385 |
Q |
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| T |
21195532 |
cgacttgatgcgtttgaagcagatagcttaggatcaaccaaatttaaaagtacaaacttttcagc |
21195468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 370
Target Start/End: Complemental strand, 24285337 - 24285240
Alignment:
| Q |
273 |
aagtcagctgtcaccatgtatactgatggtccttttgcgaattctacacgacttgatgtgtttgaagcagatagcttaggatcaaccaaatttaaaag |
370 |
Q |
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|||||| |||| |||||||||||||||||||||||||| |||||| ||| |||||||| ||||||||||| |||||||||||| ||||| ||||| |
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| T |
24285337 |
aagtcatctgtaaccatgtatactgatggtccttttgcaaattctccacaacttgatgattttgaagcagaatacttaggatcaacaaaattcaaaag |
24285240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 368
Target Start/End: Complemental strand, 10990159 - 10989968
Alignment:
| Q |
177 |
ccaattctaacaaccctttcttccacatcatttagagaaacatttgaactatttaaatgttatatagcagtgaaggacgacaatggagcgatagtcaagt |
276 |
Q |
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||||||||||| ||| |||| || |||||| || || || |||||||||||| | |||| | || |||| ||||||||||| ||||| | | ||||| |
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| T |
10990159 |
ccaattctaaccaccttttcctcaacatcagatacaggaatatttgaactattcagatgtgaaattgcagcgaaggacgacattggagtcacaaccaagt |
10990060 |
T |
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| Q |
277 |
cagctgtcaccatgtatactgatggtccttttgcgaattctacacgacttgatgtgtttgaagcagatagcttaggatcaaccaaatttaaa |
368 |
Q |
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|| |||||||||||||| | |||| ||||| || |||||| ||| ||| || | ||||||||||| |||||||||||||| ||||||| |
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| T |
10990059 |
catctgtcaccatgtatcttaatggacctttggcaaattctccacaactggaagattttgaagcagagttcttaggatcaaccagatttaaa |
10989968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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