View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2951_low_11 (Length: 366)
Name: NF2951_low_11
Description: NF2951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2951_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 341
Target Start/End: Complemental strand, 12118880 - 12118547
Alignment:
| Q |
8 |
tagcaaagggacctgatattattgtaagttttactgtttccgtatgcttgcattgatttcattagcttcttgtacatcaagagcattaaggttataggtg |
107 |
Q |
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| T |
12118880 |
tagcaaagggacctgatatttttgtaagttttactgtttccgtatgcttgcattgatttcattagcttcttgtacatcaagagcattaaggttataggtg |
12118781 |
T |
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| Q |
108 |
agtgatatcaaaaacacggtaggtcttgtgttgattgaaaatttaacccatgttttaccgaataagtgcactctatttttgttgtccttgatgtcttaat |
207 |
Q |
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| T |
12118780 |
agtgatatcaaaaacacagtagatcttgtgttgattgaaaatttaacccatgttttaccggataagtgcactctatttttgttgtccttgatgtcttaat |
12118681 |
T |
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| Q |
208 |
ggtttaccggttagacatgaatgatgcaaaatatgattaatacaatttgatgtctgtattttgttttttctatttatgatgacttcttattccttaaggt |
307 |
Q |
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| T |
12118680 |
ggtttaccggttagacatgaatgatgcaaaatatgattaatacaatttgatgtctgtattttgttttttctatttatgatgacttcttattcctgaaggt |
12118581 |
T |
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| Q |
308 |
tgggacgcctggacgagtcttggatcacctaaaa |
341 |
Q |
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| T |
12118580 |
tgggacgcctggacgagtcttggatcacctaaaa |
12118547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 341
Target Start/End: Original strand, 11924680 - 11924718
Alignment:
| Q |
303 |
aaggttgggacgcctggacgagtcttggatcacctaaaa |
341 |
Q |
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| T |
11924680 |
aaggttgggacgcctggacgactcttggatcacctaaaa |
11924718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 30645178 - 30645218
Alignment:
| Q |
301 |
ttaaggttgggacgcctggacgagtcttggatcacctaaaa |
341 |
Q |
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| T |
30645178 |
ttaaggttgggactcctggacgtgtcttggatcacctaaaa |
30645218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 341
Target Start/End: Complemental strand, 20523247 - 20523209
Alignment:
| Q |
303 |
aaggttgggacgcctggacgagtcttggatcacctaaaa |
341 |
Q |
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| T |
20523247 |
aaggttgggactcctggacgtgtcttggatcacctaaaa |
20523209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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