View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2951_low_12 (Length: 360)
Name: NF2951_low_12
Description: NF2951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2951_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 10 - 346
Target Start/End: Complemental strand, 25797330 - 25796994
Alignment:
| Q |
10 |
gcacagacaagtggagcagttgtgtcatgttttattgctgtggttgttttaatggtgttggttgtgatgtctgctttggctcttgggaagcattgaaaat |
109 |
Q |
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| T |
25797330 |
gcacaaacaagtggtgcagttgtggcatcattcattactgtggttgttttaatggtgttggttgtgatgtctgctttggctcttgggaagcattgaaaat |
25797231 |
T |
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| Q |
110 |
taagataagattgttagaagcatgcaggggcataagttacctgtattattcaccatgtttggtttggttttttctgttgtgagattaatttccttttatg |
209 |
Q |
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| T |
25797230 |
taagataagattgttagaagcatgcaggggcataagttacctgtattattcactatgtttggtttggttttttctgttgtgagattaatttccttttatg |
25797131 |
T |
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| Q |
210 |
aggtgctgaaatgtaaaattgattgctttgtatttaattaatttgggccaatgtttctatggatcgccttctactaatacttgtgactataggagtgatc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25797130 |
aggtgctgaaatgtaaaattgattgctttgtatttaattaatttgggccaatgtttctatggatcggcttctactaatacttgtgactataggagtgatc |
25797031 |
T |
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| Q |
310 |
cttagattttgttatcgtttgatttgagtacttcttg |
346 |
Q |
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| T |
25797030 |
cttcgattttgttatcgtttgatttgagtacttcttg |
25796994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 25809072 - 25808967
Alignment:
| Q |
10 |
gcacagacaagtggagcagttgtgtcatgttttattgctgtggttgttttaatggtgttggttgtgatgtctgctttggctcttgggaagcattgaaaat |
109 |
Q |
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| T |
25809072 |
gcacagacaagtggagcagtagtggcatcatttattactgtggttgttttaattgtgttggttgtgatgtctgctttggctcttgggaagcattgaaaat |
25808973 |
T |
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| Q |
110 |
taagat |
115 |
Q |
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|||||| |
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| T |
25808972 |
taagat |
25808967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 25816071 - 25815966
Alignment:
| Q |
10 |
gcacagacaagtggagcagttgtgtcatgttttattgctgtggttgttttaatggtgttggttgtgatgtctgctttggctcttgggaagcattgaaaat |
109 |
Q |
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|||||||||||||||||||| ||| ||| |||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25816071 |
gcacagacaagtggagcagtagtggcatcatttattactgtggttgttttaatcttgttggttgtgatgtctgctttggctattgggaagcattgaaaat |
25815972 |
T |
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| Q |
110 |
taagat |
115 |
Q |
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|||||| |
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| T |
25815971 |
taagat |
25815966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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