View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2951_low_18 (Length: 287)

Name: NF2951_low_18
Description: NF2951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2951_low_18
NF2951_low_18
[»] chr7 (19 HSPs)
chr7 (28-271)||(21199436-21199679)
chr7 (17-183)||(24232523-24232689)
chr7 (17-183)||(24132459-24132625)
chr7 (17-183)||(24238095-24238261)
chr7 (17-175)||(24146126-24146284)
chr7 (33-183)||(3494843-3494993)
chr7 (21-183)||(24122032-24122194)
chr7 (39-181)||(24154294-24154436)
chr7 (17-178)||(24151117-24151278)
chr7 (17-79)||(21194379-21194441)
chr7 (105-184)||(23342854-23342933)
chr7 (120-186)||(21194308-21194374)
chr7 (17-166)||(24284062-24284212)
chr7 (48-181)||(24161216-24161349)
chr7 (17-177)||(24138392-24138552)
chr7 (105-184)||(23244982-23245061)
chr7 (105-139)||(23348065-23348099)
chr7 (105-141)||(23317194-23317230)
chr7 (105-141)||(23327540-23327576)
[»] chr2 (2 HSPs)
chr2 (17-183)||(10988844-10989010)
chr2 (62-183)||(28160509-28160630)
[»] chr1 (2 HSPs)
chr1 (48-175)||(15380213-15380340)
chr1 (46-181)||(3151091-3151226)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 28 - 271
Target Start/End: Complemental strand, 21199679 - 21199436
Alignment:
Q  28 caagatttgccacactctgatacagtgagctaatgctgccaaatttcacagcttcaatgttcgactcctcggacactagtcttgcaatagttcctaaagg 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21199679 caagatttgccacactctgatacagtgagctaatgctgccaaatttcatagcttcaatattcgactcctcggacactagtcttgcaatagttcctaaagg 21199580  T
Q  128 caatgttaagaagccgaagagagcatcaacaaaatcctttcctgcctcagcatacaaaattgtgttacaatgagagattgttgttgagaatcgagttttg 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21199579 caatgttaagaagccgaagagagcatcaacaaaatcctttcctgcctcagcatacaaaattgtgttacaatgagagattgttgttgagaatcgagttttg 21199480  T
Q  228 tgtggatgatttccaactgctcggtgatgcggttgttagtggtg 271  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  21199479 tgtggatgatttccaactgctcggtgatgcagttgttagtggtg 21199436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 24232523 - 24232689
Alignment:
Q  17 atattgttcatcaagatttgccacactctgatacagtgagctaatgctgccaaatttcacagcttcaatgttcgactcctcggacactagtcttgcaata 116  Q
    |||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||| |||||||| || || ||||  | ||| | ||||||||||    
T  24232523 atattgttgatcaagatttgacacactttgatacaatgagctaatgctgccaaatttcactgcttcaatatttgagtccttagccacaaatcttgcaata 24232622  T
Q  117 gttcctaaaggcaatgttaagaagccgaagagagcatcaacaaaatcctttcctgcctcagcataca 183  Q
    || |||||||||||||||||||||| ||||||||||||||| |||||||| || |||||||||||||    
T  24232623 gtccctaaaggcaatgttaagaagctgaagagagcatcaacgaaatccttcccagcctcagcataca 24232689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 24132459 - 24132625
Alignment:
Q  17 atattgttcatcaagatttgccacactctgatacagtgagctaatgctgccaaatttcacagcttcaatgttcgactcctcggacactagtcttgcaata 116  Q
    |||||||| |||||||| || |||||| |||||||||||  |||||||||||||| |||| |||||||| |  |||||||  | ||| ||||||||||||    
T  24132459 atattgttgatcaagatctgtcacactttgatacagtgaattaatgctgccaaatatcactgcttcaatatctgactcctttgccacaagtcttgcaata 24132558  T
Q  117 gttcctaaaggcaatgttaagaagccgaagagagcatcaacaaaatcctttcctgcctcagcataca 183  Q
    || |||||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||||||||    
T  24132559 gtacctaaaggcaatgttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcataca 24132625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 24238261 - 24238095
Alignment:
Q  17 atattgttcatcaagatttgccacactctgatacagtgagctaatgctgccaaatttcacagcttcaatgttcgactcctcggacactagtcttgcaata 116  Q
    ||||||||||||||||| ||| ||||| |||| |||||| || | ||| |||| | | |||||| | || ||||||| ||  | | | ||||||||||||    
T  24238261 atattgttcatcaagatctgctacactttgatgcagtgaactcaggcttccaactgttacagctccgatattcgactgcttagccgcaagtcttgcaata 24238162  T
Q  117 gttcctaaaggcaatgttaagaagccgaagagagcatcaacaaaatcctttcctgcctcagcataca 183  Q
    ||||||||||||||||||||||| | |||||||||||| ||||||||||| ||||||||||||||||    
T  24238161 gttcctaaaggcaatgttaagaaactgaagagagcatcgacaaaatccttgcctgcctcagcataca 24238095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 24146126 - 24146284
Alignment:
Q  17 atattgttcatcaagatttgccacactctgatacagtgagctaatgctgccaaatttcacagcttcaatgttcgactcctcggacactagtcttgcaata 116  Q
    |||||||  |||||||| || |||||| ||||||| |||||||||||||||||||||||| | |||||| || || ||||  | ||| ||| |||||||     
T  24146126 atattgtgtatcaagatctgacacactttgatacaatgagctaatgctgccaaatttcactgattcaatatttgagtcctttgccacgagttttgcaatg 24146225  T
Q  117 gttcctaaaggcaatgttaagaagccgaagagagcatcaacaaaatcctttcctgcctc 175  Q
    || ||||||||||||| ||||||||  || ||| |||||||||||||||||||||||||    
T  24146226 gtccctaaaggcaatgataagaagctcaaaagaacatcaacaaaatcctttcctgcctc 24146284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 33 - 183
Target Start/End: Original strand, 3494843 - 3494993
Alignment:
Q  33 tttgccacactctgatacagtgagctaatgctgccaaatttcacagcttcaatgttcgactcctcggacactagtcttgcaatagttcctaaaggcaatg 132  Q
    |||| |||||| ||||| |||||||||||||| ||||||||||| |||||||| || || ||||  || |||| |||||||||||| |||| ||||||||    
T  3494843 tttgacacactttgatatagtgagctaatgctaccaaatttcactgcttcaatatttgaatccttagaaactaatcttgcaatagtacctagaggcaatg 3494942  T
Q  133 ttaagaagccgaagagagcatcaacaaaatcctttcctgcctcagcataca 183  Q
    ||||||| |  |||||| |||| || |||||||| || || ||||||||||    
T  3494943 ttaagaaactaaagagaacatcgacgaaatccttaccggcttcagcataca 3494993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 24122032 - 24122194
Alignment:
Q  21 tgttcatcaagatttgccacactctgatacagtgagctaatgctgccaaatttcacagcttcaatgttcgactcctcggacactagtcttgcaatagttc 120  Q
    ||||||||||||| ||  ||||| ||||| ||||  || | |||||||||| |||| |||||||| |  |||||||  | ||| ||||||| |||||| |    
T  24122032 tgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtcttgaaatagtac 24122131  T
Q  121 ctaaaggcaatgttaagaagccgaagagagcatcaacaaaatcctttcctgcctcagcataca 183  Q
    |||| || || |||||||||| ||| |||||||||||||||||||| ||||| ||||||||||    
T  24122132 ctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcataca 24122194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 181
Target Start/End: Original strand, 24154294 - 24154436
Alignment:
Q  39 acactctgatacagtgagctaatgctgccaaatttcacagcttcaatgttcgactcctcggacactagtcttgcaatagttcctaaaggcaatgttaaga 138  Q
    ||||| ||||||||||| ||||||||   |||||| || |||||||| |||||||| |  || || |||||||||||||| |||||||||||||||||||    
T  24154294 acactttgatacagtgaactaatgctattaaatttaactgcttcaatattcgactctttagatacaagtcttgcaatagtacctaaaggcaatgttaaga 24154393  T
Q  139 agccgaagagagcatcaacaaaatcctttcctgcctcagcata 181  Q
    |||  || ||| ||||||| ||||||||  |||| ||||||||    
T  24154394 agcttaacagaacatcaacgaaatccttctctgcttcagcata 24154436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 24151117 - 24151278
Alignment:
Q  17 atattgttcatcaagatttgccacactctgatacagtgagctaatgctgccaaatttcacagcttcaatgttcgactcctcggacactagtcttgcaata 116  Q
    |||||||  |||||||| |  |||||| ||||| ||||| || |  || ||||||||||| ||||| || || ||||| || | ||| ||||| ||||||    
T  24151117 atattgtggatcaagatctttcacactttgatatagtgaactcaaactaccaaatttcactgcttcgatatttgactcttcagccacgagtctagcaata 24151216  T
Q  117 gttcctaaaggcaatgttaagaagccgaagagagcatcaacaaaatcctttcctgcctcagc 178  Q
    || |||||||| ||||||||||||| |||||| ||||||||||||||||| || ||||||||    
T  24151217 gtacctaaaggaaatgttaagaagctgaagagtgcatcaacaaaatccttcccagcctcagc 24151278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 21194441 - 21194379
Alignment:
Q  17 atattgttcatcaagatttgccacactctgatacagtgagctaatgctgccaaatttcacagc 79  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  21194441 atattgttcatcaagatttgccacactttgatatagtgagctaatgctgccaaatttgacagc 21194379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 23342854 - 23342933
Alignment:
Q  105 agtcttgcaatagttcctaaaggcaatgttaagaagccgaagagagcatcaacaaaatcctttcctgcctcagcatacaa 184  Q
    |||||||||||||||||||||||||||||||||||||  || ||| |||| ||||| ||||||||||| |||||| ||||    
T  23342854 agtcttgcaatagttcctaaaggcaatgttaagaagctaaacagaacatccacaaagtcctttcctgcttcagcaaacaa 23342933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 21194374 - 21194308
Alignment:
Q  120 cctaaaggcaatgttaagaagccgaagagagcatcaacaaaatcctttcctgcctcagcatacaaaa 186  Q
    |||||||||||||||||||||| ||| ||| | |||| ||||||||| |||||||||||||||||||    
T  21194374 cctaaaggcaatgttaagaagctgaatagaacttcaataaaatccttccctgcctcagcatacaaaa 21194308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 24284212 - 24284062
Alignment:
Q  17 atattgttcatcaagatttgccacactctgatacagtgagctaatgctgccaaatttca-cagcttcaatgttcgactcctcggacactagtcttgcaat 115  Q
    |||||||| |||||||| |   ||||| |||||||||||||||||||||||||| || | | |||||||| || || ||    |  || |||||||||||    
T  24284212 atattgttgatcaagatcttttacactttgatacagtgagctaatgctgccaaaattgaactgcttcaatatttgagtctgtagcaacgagtcttgcaat 24284113  T
Q  116 agttcctaaaggcaatgttaagaagccgaagagagcatcaacaaaatcctt 166  Q
    ||| ||||| ||||| || ||||||| ||||||  ||||||||||||||||    
T  24284112 agtccctaagggcaaggtaaagaagctgaagaggacatcaacaaaatcctt 24284062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 181
Target Start/End: Original strand, 24161216 - 24161349
Alignment:
Q  48 tacagtgagctaatgctgccaaatttcacagcttcaatgttcgactcctcggacactagtcttgcaatagttcctaaaggcaatgttaagaagccgaaga 147  Q
    |||||||| ||||||||||||||  |||| ||||| || || ||||| |  || |  ||||  |||||||| |||| ||| ||||| ||||||| ||| |    
T  24161216 tacagtgaactaatgctgccaaacctcactgcttccatatttgactctttagatatgagtcaagcaatagtccctagaggtaatgtcaagaagctgaaaa 24161315  T
Q  148 gagcatcaacaaaatcctttcctgcctcagcata 181  Q
    || |||| |||||||||||||| |||||||||||    
T  24161316 gaacatcgacaaaatcctttccagcctcagcata 24161349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 24138392 - 24138552
Alignment:
Q  17 atattgttcatcaagatttgccacactctgatacagtgagctaatgctgccaaatttcacagcttcaatgttcgactcctcggacactagtcttgcaata 116  Q
    |||||||| |||||||  || |||||| ||||| ||||| || |||||||||||| |||| |||||||| || ||||| |    ||| | || ||| |||    
T  24138392 atattgttgatcaagaactgacacactttgatagagtgaacttatgctgccaaatctcactgcttcaatatttgactctttatccacgattcctgcgata 24138491  T
Q  117 gttcctaaaggcaatgttaagaagccgaagagagcatcaacaaaatcctttcctgcctcag 177  Q
    || ||||| || ||||||||||| |  || ||| ||||||||||||||||  |||||||||    
T  24138492 gtacctaagggtaatgttaagaaactcaaaagaacatcaacaaaatccttatctgcctcag 24138552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 23244982 - 23245061
Alignment:
Q  105 agtcttgcaatagttcctaaaggcaatgttaagaagccgaagagagcatcaacaaaatcctttcctgcctcagcatacaa 184  Q
    ||||||||||| ||||||||||||||||| |||||||  || | |||||| ||||| || || |||||||||||| ||||    
T  23244982 agtcttgcaatggttcctaaaggcaatgtcaagaagctaaataaagcatccacaaagtctttacctgcctcagcaaacaa 23245061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 23348065 - 23348099
Alignment:
Q  105 agtcttgcaatagttcctaaaggcaatgttaagaa 139  Q
    |||||||||||||||||||| ||||||||||||||    
T  23348065 agtcttgcaatagttcctaatggcaatgttaagaa 23348099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 23317194 - 23317230
Alignment:
Q  105 agtcttgcaatagttcctaaaggcaatgttaagaagc 141  Q
    |||||||||||||||||||| || |||||||||||||    
T  23317194 agtcttgcaatagttcctaatggtaatgttaagaagc 23317230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 23327540 - 23327576
Alignment:
Q  105 agtcttgcaatagttcctaaaggcaatgttaagaagc 141  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  23327540 agtcttgcaattgttcctaatggcaatgttaagaagc 23327576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 10989010 - 10988844
Alignment:
Q  17 atattgttcatcaagatttgccacactctgatacagtgagctaatgctgccaaatttcacagcttcaatgttcgactcctcggacactagtcttgcaata 116  Q
    |||||| | |||||||| |  |||||| ||||| ||||| |||||||| |||||||  || |||||||| || |||||    | ||| ||||| ||||||    
T  10989010 atattgctgatcaagatctttcacactttgatatagtgaactaatgctaccaaattgaactgcttcaatatttgactctgtagccacaagtctcgcaata 10988911  T
Q  117 gttcctaaaggcaatgttaagaagccgaagagagcatcaacaaaatcctttcctgcctcagcataca 183  Q
    || |||||||||||||||||||||| ||||||| ||||||| ||||||||  |||||||||||||||    
T  10988910 gtccctaaaggcaatgttaagaagctgaagagaacatcaacgaaatccttcactgcctcagcataca 10988844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 183
Target Start/End: Complemental strand, 28160630 - 28160509
Alignment:
Q  62 gctgccaaatttcacagcttcaatgttcgactcctcggacactagtcttgcaatagttcctaaaggcaatgttaagaagccgaagagagcatcaacaaaa 161  Q
    ||||||||||||||| || ||||| |  |||||||  | ||| ||||| | |||||| |||||  | || |||||||||| ||| |||||| ||||||||    
T  28160630 gctgccaaatttcactgcgtcaatatctgactccttagccacaagtctagaaatagtacctaacagtaaggttaagaagctgaaaagagcaccaacaaaa 28160531  T
Q  162 tcctttcctgcctcagcataca 183  Q
    ||||| ||||| ||||||||||    
T  28160530 tccttccctgcttcagcataca 28160509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 15380340 - 15380213
Alignment:
Q  48 tacagtgagctaatgctgccaaatttcacagcttcaatgttcgactcctcggacactagtcttgcaatagttcctaaaggcaatgttaagaagccgaaga 147  Q
    |||| |||||| | ||| ||||||||||| || || || || |||||||  | | | |||||||||||||| |||||||| ||| ||||||||| ||| |    
T  15380340 tacaatgagctcaagcttccaaatttcactgcgtcgatatttgactccttagccgcaagtcttgcaatagtccctaaaggaaatattaagaagctgaaaa 15380241  T
Q  148 gagcatcaacaaaatcctttcctgcctc 175  Q
    ||| ||||||||||||||| ||||||||    
T  15380240 gagtatcaacaaaatccttccctgcctc 15380213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 181
Target Start/End: Complemental strand, 3151226 - 3151091
Alignment:
Q  46 gatacagtgagctaatgctgccaaatttcacagcttcaatgttcgactcctcggacactagtcttgcaatagttcctaaaggcaatgttaagaagccgaa 145  Q
    |||||| |||||| |||||||||| |||||| |||||||| || |||||||  || |  |||||||||||||| |||| ||| |||||||| || |  ||    
T  3151226 gatacaatgagcttatgctgccaagtttcactgcttcaatatttgactcctgagaaatgagtcttgcaatagtccctagaggtaatgttaaaaaactcaa 3151127  T
Q  146 gagagcatcaacaaaatcctttcctgcctcagcata 181  Q
     ||| |||| || |||||||| || |||||||||||    
T  3151126 aagaacatcgacgaaatccttcccagcctcagcata 3151091  T

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