View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2951_low_20 (Length: 274)
Name: NF2951_low_20
Description: NF2951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2951_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 21 - 261
Target Start/End: Original strand, 1516938 - 1517178
Alignment:
| Q |
21 |
ctttctccatcatggtcagatctgtgtcgaagacttgctacatcaccattccaagtcttggcgtgttgaagtgatttgaggtatgttccataccactatg |
120 |
Q |
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| T |
1516938 |
ctttctccatcatggtcagatctgtgtcgaagacttgctacatcaccattccaagtcttggcatgttgaagtgatttgaggtatgttccataccactatg |
1517037 |
T |
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| Q |
121 |
gcttataatattaatgatattttgctatattcccagttnnnnnnnntaggattacttggtatcctgagattgtcgcctcttatttgatgaagtcggcata |
220 |
Q |
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| T |
1517038 |
gcttataatattaatgatattttgctatattcccagttaaaaaaaataggattacttggtatcctgagattgtcgcctcttatttgatgaagtcggcata |
1517137 |
T |
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| Q |
221 |
taggctagctacggctcatcttgtggacacaagtgaacttc |
261 |
Q |
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| T |
1517138 |
taggctagctacggctcatcttgtggacacaagtgaacttc |
1517178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 2908273 - 2908513
Alignment:
| Q |
23 |
ttctccatcatggtcagatct--gtgtcgaagacttgctacatcaccattccaagtcttggcgtgttgaagtgatttgaggtatgttccataccactatg |
120 |
Q |
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|||||| | |||||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| | | |||||||||| |
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| T |
2908273 |
ttctccgttatggtcagatctttgtgtcgaagacttgctgcatcaccattccaaggcttggcatgttgaagtgatttgaggtatgcttcctaccactatg |
2908372 |
T |
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| Q |
121 |
gcttataatattaatgatattttgctatattcccagttnnnnnnnntaggattacttggtatcctgagattgtcgcctcttatttgatgaagtcggcata |
220 |
Q |
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| T |
2908373 |
gtttataatattattggcatttcgctatattcccagttaaagcaaataggattacttggtatcctgagattgtgacctcttattcgatgaagtcggcata |
2908472 |
T |
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| Q |
221 |
taggctagctacggctcatcttgtggacacaagtgaacttc |
261 |
Q |
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| T |
2908473 |
taggctagttatcgctcattttgtggacacaagtgaacttc |
2908513 |
T |
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