View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2951_low_21 (Length: 263)
Name: NF2951_low_21
Description: NF2951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2951_low_21 |
 | |
|
| [»] scaffold0024 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 262
Target Start/End: Original strand, 2974142 - 2974393
Alignment:
| Q |
11 |
gatgaacggataatacatataccgactgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggt |
110 |
Q |
| |
|
||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||||| ||||||||||| |
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|
| T |
2974142 |
gatgaacaaataatacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgaacactaaaagtgaatgtttacatgacttgaggt |
2974241 |
T |
|
| Q |
111 |
tttcgggaggagttcttgaaattcctcaattaacggttgacgatgcgaccgaaactttatttcggaatatggttgctttggagctgtgtcattacccata |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| | |||| |||||||| ||| ||||||||||||||||||||||||| |||||||||||| || |
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|
| T |
2974242 |
tttcgggaggagttcttgaaattcctcaattaacagttcaagatgggaccgaaattttgtttcggaatatggttgctttggagcagtgtcattaccctta |
2974341 |
T |
|
| Q |
211 |
tgagtcatatattattgattatcattttattttggattaccttataaatact |
262 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2974342 |
tcagtcatatattattgattatcattttattttggattaccttataaatact |
2974393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 2927303 - 2927547
Alignment:
| Q |
19 |
gataatacatataccgactgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcggga |
118 |
Q |
| |
|
||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2927303 |
gataaaacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaagtaagtgtttacttgacttgaggttttcggga |
2927402 |
T |
|
| Q |
119 |
ggagttcttgaaattcctcaattaacggttgacgatgcgaccgaaactttatttcggaatatggttgctttggagctgtgtcattacccatatgagtcat |
218 |
Q |
| |
|
||||||||||||||||||||||||| ||| | ||| |||| ||||||||||| |||||||||||||||||||||| |||||||||||| |||| |||| |
|
|
| T |
2927403 |
ggagttcttgaaattcctcaattaaaagttcaggattcgactgaaactttattacggaatatggttgctttggagcagtgtcattaccctgatgattcat |
2927502 |
T |
|
| Q |
219 |
atattattgattatcattttattttggattaccttataaatactg |
263 |
Q |
| |
|
|||||| |||||||| || | |||||||||||||||||||||||| |
|
|
| T |
2927503 |
atattactgattatcgttctgttttggattaccttataaatactg |
2927547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 31 - 263
Target Start/End: Complemental strand, 3003707 - 3003475
Alignment:
| Q |
31 |
accgactgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcgggaggagttcttgaa |
130 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3003707 |
accgagtgcaactgagttgttagaagctggagttagatttaaagtgaacactgaaagtaagtgtttacttgacttgaggttttcgggaggagttcttgaa |
3003608 |
T |
|
| Q |
131 |
attcctcaattaacggttgacgatgcgaccgaaactttatttcggaatatggttgctttggagctgtgtcattacccatatgagtcatatattattgatt |
230 |
Q |
| |
|
|||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||| |||| |
|
|
| T |
3003607 |
attcctcaattattagttgcggattcgaccgaaactttatttcggaatatggttgctttggagcagtgtcattaccctgatgattcatatattaccgatt |
3003508 |
T |
|
| Q |
231 |
atcattttattttggattaccttataaatactg |
263 |
Q |
| |
|
||| || | |||||||||||||||||||||||| |
|
|
| T |
3003507 |
atcgttctgttttggattaccttataaatactg |
3003475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 2937598 - 2937845
Alignment:
| Q |
14 |
gaacggataatacatataccgactgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggtttt |
113 |
Q |
| |
|
|||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||| |
|
|
| T |
2937598 |
gaacagataatacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaagtaattgtttacttgacttgagatttt |
2937697 |
T |
|
| Q |
114 |
cgggaggagttcttgaaattcctcaattaacggttgacgatgcgaccgaaactttatttcggaatatggttgctttggagctgtgtcattacccatatga |
213 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||| ||| ||||||||| ||| ||| ||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
2937698 |
caggaggagttcttgaaattcctcaattaacagttgaggattcgaccgaaattttgttttggaatatggttgctttggagcagtgtcattaccctcatga |
2937797 |
T |
|
| Q |
214 |
gtcatatattattgattatcattttattttggattaccttataaatac |
261 |
Q |
| |
|
|||||||||| ||||||| | || |||||||||||||||||||||| |
|
|
| T |
2937798 |
gtcatatattgctgattatgttgttgttttggattaccttataaatac |
2937845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 2952075 - 2952320
Alignment:
| Q |
18 |
ggataatacatataccgactgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcggg |
117 |
Q |
| |
|
|||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2952075 |
ggataaaacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaagtaagtgtttacttgacttgaggttttcgga |
2952174 |
T |
|
| Q |
118 |
aggagttcttgaaattcctcaattaacggttgacgatgcgaccgaaactttatttcggaatatggttgctttggagctgtgtcattacccatatgagtca |
217 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | ||| | ||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||| |
|
|
| T |
2952175 |
aggagttcttgaaattcctcaattaaaagttcaggattcaaccgaaactttatttcggaatatggttgctttggagcagtgtcattaccctgaggagtca |
2952274 |
T |
|
| Q |
218 |
tatattattgattatcattttattttggattaccttataaatactg |
263 |
Q |
| |
|
|||||| ||||||| | || ||||||||||| |||||||||||| |
|
|
| T |
2952275 |
tatattgctgattatgttgttgttttggattacattataaatactg |
2952320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 2964652 - 2964896
Alignment:
| Q |
19 |
gataatacatataccgactgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcggga |
118 |
Q |
| |
|
|||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2964652 |
gataatacatctacctagtgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaagtaagtgtttacttgacttgaggttttcggga |
2964751 |
T |
|
| Q |
119 |
ggagttcttgaaattcctcaattaacggttgacgatgcgaccgaaactttatttcggaatatggttgctttggagctgtgtcattacccatatgagtcat |
218 |
Q |
| |
|
||||||||||||||||||||||||| | | |||||| |||||||| | | ||||||||||||||||||||||||| ||||| |||||| |||||||||| |
|
|
| T |
2964752 |
ggagttcttgaaattcctcaattaatagctcacgatgggaccgaaattatgtttcggaatatggttgctttggagcagtgtcgttacccttatgagtcat |
2964851 |
T |
|
| Q |
219 |
atattattgattatcattttattttggattaccttataaatactg |
263 |
Q |
| |
|
|||||| ||| ||| | | |||||||||||||||||||||||| |
|
|
| T |
2964852 |
atattactgactatgttgctgttttggattaccttataaatactg |
2964896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 263
Target Start/End: Complemental strand, 2658931 - 2658676
Alignment:
| Q |
14 |
gaacggataatacatataccgactgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggtttt |
113 |
Q |
| |
|
|||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| |
|
|
| T |
2658931 |
gaacggatgatacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgagcactaaaagtaagtgtttacttgacttgaggtttt |
2658832 |
T |
|
| Q |
114 |
cg------ggaggagttcttgaaattcctcaattaacggttgacgatgcgaccgaaactttatttcggaatatggttgctttggagctgtgtcattaccc |
207 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
2658831 |
caaaatcaggaggagttcttgaaattcctcaattaacggttgacgataggactgaaattttgtttcgaaatatggttgctttggagcaatgtcattaccc |
2658732 |
T |
|
| Q |
208 |
atatgagtcatatattattgattatcattttattttggattaccttataaatactg |
263 |
Q |
| |
|
|||||||||||||||| ||||||| | | |||||||||||||||||||||||| |
|
|
| T |
2658731 |
ttatgagtcatatattactgattatgttgctgttttggattaccttataaatactg |
2658676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 37 - 263
Target Start/End: Original strand, 2929470 - 2929696
Alignment:
| Q |
37 |
tgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcgggaggagttcttgaaattcct |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
2929470 |
tgcaactgagttgttagaagctggagttaggtttaaagtgaacactaaaagtaagtgtttacttgacttaaggttttcaggaggagttcttgaaattcct |
2929569 |
T |
|
| Q |
137 |
caattaacggttgacgatgcgaccgaaactttatttcggaatatggttgctttggagctgtgtcattacccatatgagtcatatattattgattatcatt |
236 |
Q |
| |
|
|||||||| |||| |||| |||||||||||||||| |||||||| |||||||||||| || ||||||||| |||||||||||||| |||||||| | |
|
|
| T |
2929570 |
caattaacagttgcagatgggaccgaaactttattttggaatatgattgctttggagcagtttcattaccctcatgagtcatatattcttgattatgtta |
2929669 |
T |
|
| Q |
237 |
ttattttggattaccttataaatactg |
263 |
Q |
| |
|
|||| |||||| ||||||||||||| |
|
|
| T |
2929670 |
ctattatggattttcttataaatactg |
2929696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 37 - 263
Target Start/End: Original strand, 2934760 - 2934986
Alignment:
| Q |
37 |
tgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcgggaggagttcttgaaattcct |
136 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2934760 |
tgcaactgaattgttagaagctggagttaggtttaaagtgaatactaaaagtaagtgtttacttgacttgaggttttcgggaggagttcttgaaattcct |
2934859 |
T |
|
| Q |
137 |
caattaacggttgacgatgcgaccgaaactttatttcggaatatggttgctttggagctgtgtcattacccatatgagtcatatattattgattatcatt |
236 |
Q |
| |
|
|||||||||||||||||| ||| |||| || ||||| ||||||||||||||||||| |||||||||||| |||| |||||||| | ||||||| | |
|
|
| T |
2934860 |
caattaacggttgacgataggactgaaatttcgtttcgaaatatggttgctttggagcagtgtcattaccctgatgattcatatatcactgattatgttg |
2934959 |
T |
|
| Q |
237 |
ttattttggattaccttataaatactg |
263 |
Q |
| |
|
| | ||||||||||||||||||||| |
|
|
| T |
2934960 |
ctgtcatggattaccttataaatactg |
2934986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 2983002 - 2983250
Alignment:
| Q |
15 |
aacggataatacatataccgactgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttc |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| |||||||||||||||||||| ||||||| ||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
2983002 |
aacggataatacatatacagactgcaactcagttggtagaagctggagttaggtttcaagtgaaaactaaaagtaagtgtttatatgacttgaggttttc |
2983101 |
T |
|
| Q |
115 |
gggaggagttcttgaaattcctcaattaacggttgacgat---gcgaccgaaactttatttcggaatatggttgctttggagctgtgtcattacccatat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| | ||| ||||||||| ||| |||||||||||| |||||||||||| ||||||||||| || |
|
|
| T |
2983102 |
gggaggagttcttgaaattcctcaattaatagttcatgatcggacgaccgaaattttgtttcggaatatgattgctttggagcattgtcattaccctcat |
2983201 |
T |
|
| Q |
212 |
gagtcatatattattgattatcattttattttggattaccttataaata |
260 |
Q |
| |
|
|||||||||||| |||||||| | || ||||||||||||||||||||| |
|
|
| T |
2983202 |
gagtcatatattcttgattatgttcttgttttggattaccttataaata |
2983250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 263
Target Start/End: Complemental strand, 2997303 - 2997064
Alignment:
| Q |
24 |
tacatataccgactgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcgggaggagt |
123 |
Q |
| |
|
||||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2997303 |
tacatctaccaagtgcaactgagttgttagaagctggagttaagtttaaagtgaacactaaaagcaagtgtttacttgacttgaggttttcgggagaagt |
2997204 |
T |
|
| Q |
124 |
tcttgaaattcctcaattaacggttgacgatgcgaccgaaactttatttcggaatatggttgctttggagctgtgtcattacccatatgagtcatatatt |
223 |
Q |
| |
|
||||||||||||| |||| ||||| ||| ||||||| |||||||||||||||||||||||||||||| || ||||||| | | ||| ||||||| |
|
|
| T |
2997203 |
tcttgaaattccttcgttaattgttgaggatcggaccgaagctttatttcggaatatggttgctttggagcagtttcattacactaacaagttatatatt |
2997104 |
T |
|
| Q |
224 |
attgattatcattttattttggattaccttataaatactg |
263 |
Q |
| |
|
| ||||||| || | ||||||||||||||||||| |||| |
|
|
| T |
2997103 |
actgattatgtttctgttttggattaccttataaacactg |
2997064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 2978408 - 2978550
Alignment:
| Q |
37 |
tgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcgggaggagttcttgaaattcct |
136 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||| ||| | ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2978408 |
tgcaactgaattgttagaagctgga-ttaggtttaaagtgaacactaaaagtgagtgtttacttgatttgaggttttcgggaggagttcttgaaattcct |
2978506 |
T |
|
| Q |
137 |
caattaacggttgacgatgcgaccgaaactttatttcggaatat |
180 |
Q |
| |
|
||||||| ||||| |||| |||||||| ||| |||||| |||| |
|
|
| T |
2978507 |
caattaagagttgaggatgggaccgaaattttgtttcggtatat |
2978550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 2979192 - 2979247
Alignment:
| Q |
177 |
atatggttgctttggagctgtgtcattacccatatgagtcatatattattgattat |
232 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| ||||||||||||||| ||||||| |
|
|
| T |
2979192 |
atatggttgctttggagcagtgttattaccctcatgagtcatatattactgattat |
2979247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 2954555 - 2954608
Alignment:
| Q |
90 |
agtgtttacttgacttgaggttttcgggaggagttcttgaaattcctcaattaa |
143 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||| |||||||||||||| |
|
|
| T |
2954555 |
agtgtttacttgacttgaggttttcacaacgagttcttggaattcctcaattaa |
2954608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 38 - 262
Target Start/End: Original strand, 3339187 - 3339411
Alignment:
| Q |
38 |
gcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcgggaggagttcttgaaattcctc |
137 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||| | |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3339187 |
gcaactgagttgttagaagcaggagttaggtttaaagtgaacactaaaagtgagtgtttacttggcttgaggttttcgggaggagttcttgaaattcctc |
3339286 |
T |
|
| Q |
138 |
aattaacggttgacgatgcgaccgaaactttatttcggaatatggttgctttggagctgtgtcattacccatatgagtcatatattattgattatcattt |
237 |
Q |
| |
|
||||||| |||||||||| |||||||| ||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
3339287 |
aattaacagttgacgatgggaccgaaattttgtttcggaatatggttgctttggagcagtgtcattaccctgatgagtcatatattattgattatgttgc |
3339386 |
T |
|
| Q |
238 |
tattttggattaccttataaatact |
262 |
Q |
| |
|
| ||||||||| ||||||||||||| |
|
|
| T |
3339387 |
ttttttggatttccttataaatact |
3339411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 134; Significance: 8e-70; HSPs: 3)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 14 - 263
Target Start/End: Complemental strand, 35182 - 34933
Alignment:
| Q |
14 |
gaacggataatacatataccgactgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggtttt |
113 |
Q |
| |
|
|||| |||||||||| |||||| ||||||| |||||||||||||||||||||||||| ||||||| || ||| | ||||||||||||||||| |||||| |
|
|
| T |
35182 |
gaacagataatacatctaccgagtgcaactcagttgttagaagctggagttaggtttcaagtgaagcctaaaagtgagtgtttacttgacttggggtttt |
35083 |
T |
|
| Q |
114 |
cgggaggagttcttgaaattcctcaattaacggttgacgatgcgaccgaaactttatttcggaatatggttgctttggagctgtgtcattacccatatga |
213 |
Q |
| |
|
||| |||||| ||||||||||||| |||| ||||| |||| |||||||| ||| ||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
35082 |
cggaaggagtgcttgaaattcctcgattagaagttgaggatgggaccgaaattttgtttcggaatatggttgctttggagcagtgtcattacccttatga |
34983 |
T |
|
| Q |
214 |
gtcatatattattgattatcattttattttggattaccttataaatactg |
263 |
Q |
| |
|
||||||||||| ||||||| | || ||||||||| |||||||||||||| |
|
|
| T |
34982 |
gtcatatattactgattatgttgttgttttggatttccttataaatactg |
34933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 90 - 263
Target Start/End: Complemental strand, 44795 - 44622
Alignment:
| Q |
90 |
agtgtttacttgacttgaggttttcgggaggagttcttgaaattcctcaattaacggttgacgatgcgacc-gaaactttatttcggaatatggttgctt |
188 |
Q |
| |
|
||||||||||||| ||||||||||| | | |||||||||||||||||||||||| | ||| ||| | ||| |||| ||| ||| | |||||||||||| |
|
|
| T |
44795 |
agtgtttacttgatttgaggttttcagaaagagttcttgaaattcctcaattaagagctgatgat-caacctgaaattttgttttgaaatatggttgcta |
44697 |
T |
|
| Q |
189 |
tggagctgtgtcattacccatatgagtcatatattattgattatcattttattttggattaccttataaatactg |
263 |
Q |
| |
|
||||| || ||||||||| |||| |||||||||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
44696 |
tggagtagtatcattaccctaatgaatcatatattattaattatgttgctattttggattaccttataaatactg |
44622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 45168 - 45123
Alignment:
| Q |
37 |
tgcaactgagttgttagaagctggagttaggtttaaagtgaacact |
82 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
45168 |
tgcaaatgagttgttagaagctggagttaggtttcaagtgaccact |
45123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 188
Target Start/End: Original strand, 49618589 - 49618735
Alignment:
| Q |
41 |
actgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcgggaggagttcttgaaattcctcaat |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
49618589 |
actgagttgttagaagctggagttaggtttaaagtgaacactaaaactacatgtttacttgacttgaggttttccggacgagttcttgaaattcctcaat |
49618688 |
T |
|
| Q |
141 |
taacggttgacgatgcgaccgaaactttatttcggaatatggttgctt |
188 |
Q |
| |
|
||| ||||| || ||||| |||||||||| ||||||||||||||| |
|
|
| T |
49618689 |
taagagttgaggaccggaccgtaactttattt-ggaatatggttgctt |
49618735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 37 - 207
Target Start/End: Original strand, 49613597 - 49613767
Alignment:
| Q |
37 |
tgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcgggaggagttcttgaaattcct |
136 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||| ||| | ||||||||||||| ||||||||||| ||| | ||||||||||||||| |
|
|
| T |
49613597 |
tgcaactgagttgttagaagctggggtgaggtttaaagtgaacactaaaagtgagtgtttacttgatttgaggttttcaggacgggttcttgaaattcct |
49613696 |
T |
|
| Q |
137 |
caattaacggttgacgatgcgaccgaaactttatttcggaatatggttgctttggagctgtgtcattaccc |
207 |
Q |
| |
|
||||| | ||||| ||| ||| |||| ||| ||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
49613697 |
caattgaaagttgaggattggactgaaattttgtttcggaatatggttgctttggagcaatgtcactaccc |
49613767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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