View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2951_low_22 (Length: 262)
Name: NF2951_low_22
Description: NF2951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2951_low_22 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 60 - 251
Target Start/End: Complemental strand, 33045629 - 33045440
Alignment:
| Q |
60 |
ttttacatttcgaaacttgaacatatgaaatcttgtgtctcaannnnnnnnnnnnnnggttacaaagctaaaagtaacaaacagaaataaagcaggaagg |
159 |
Q |
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| T |
33045629 |
ttttacatttcgaaacttgaacatatgaaatcttgt--ctcaatttttttcttttttgattacaaagctaaaaataacaaacagaaagaaagcaggaagg |
33045532 |
T |
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| Q |
160 |
caaacagaaaaactcaagctgttggaaagtaaactcccattgcatcgtttcttagcatgtcgagaagatcatgaggaggggatgagtgtgca |
251 |
Q |
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| T |
33045531 |
caaacagaaaaactcaagctgttggaaagtaaactcccattgcatcgttccttagcatgtcgagaagatcatgaggaggggacgagcgtgca |
33045440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 33045706 - 33045668
Alignment:
| Q |
18 |
taattttgatgtagctgctttttctttgtatttggatct |
56 |
Q |
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| T |
33045706 |
taattttgatgtagctgctttttctttgtatttggatct |
33045668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 34686173 - 34686294
Alignment:
| Q |
118 |
gttacaaagctaaaagtaacaaacagaaataaagcaggaaggcaaacagaaaaactcaagctgttggaaagtaaactcccattgcatcgtttcttagcat |
217 |
Q |
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| T |
34686173 |
gttacaaagctaaaa-taacaaacaaaaagcaaccaggaagaaaaacagaaaa-ctcaagctctttgaaagaaaactcccattgcatcgttccttagcat |
34686270 |
T |
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| Q |
218 |
gtcgagaagatcatgaggagggga |
241 |
Q |
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| T |
34686271 |
gccgagaagatcacgaggagggga |
34686294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 32723350 - 32723430
Alignment:
| Q |
161 |
aaacagaaaaactcaagctgttggaaagtaaactcccattgcatcgtttcttagcatgtcgagaagatcatgaggagggga |
241 |
Q |
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| T |
32723350 |
aaacagaaaaactcaagctcttggaaagaaaactctcattgtgtcgttccttagcatgtcgataatatcatggggagggga |
32723430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 47422589 - 47422663
Alignment:
| Q |
167 |
aaaaactcaagctgttggaaagtaaactcccattgcatcgtttcttagcatgtcgagaagatcatgaggagggga |
241 |
Q |
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| T |
47422589 |
aaaaactcaagctattgggaagaaaactctcattgcatcgttccttagcatgttgagaagatcatgaggagggga |
47422663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 5191034 - 5191107
Alignment:
| Q |
168 |
aaaactcaagctgttggaaagtaaactcccattgcatcgtttcttagcatgtcgagaagatcatgaggagggga |
241 |
Q |
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| T |
5191034 |
aaaactcaagctcttgggaagaaaactctcattgcatcgttccttagcatgccgagaagatcatgaggagggga |
5191107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 43300582 - 43300503
Alignment:
| Q |
173 |
tcaagctgttggaaagtaaactcccattgcatcgtttcttagcatgtcgagaagatcatgaggaggggatgagtgtgcat |
252 |
Q |
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| T |
43300582 |
tcaagctcttgggaaataaactcccattgcatcgttccgtaacatgtcgataagatcatgaggaggagacgaatgtgcat |
43300503 |
T |
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Target: scaffold0019 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 66029 - 65969
Alignment:
| Q |
161 |
aaacagaaaaactcaagctgttggaaagtaaa---ctcccattgcatcgtttcttagcatg |
218 |
Q |
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| T |
66029 |
aaacagaaaaactcaagctcttggaaagaaaactcctcccattgcatcgttccatagcatg |
65969 |
T |
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