View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2951_low_26 (Length: 250)
Name: NF2951_low_26
Description: NF2951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2951_low_26 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 28385140 - 28385387
Alignment:
| Q |
8 |
cgaagaatatcgggtggttacattag-tatgagagcagttcgatctagttcagactgttggaatgattgggtagtttgtgtaagtcgtcttagtgctggt |
106 |
Q |
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| T |
28385140 |
cgaaaaatatcgggtgtttacatttggtatgagaacagttcgatctagttcagaccgttggaatgattgggtagtttgtgtaagtcgtcttagtgctggt |
28385239 |
T |
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| Q |
107 |
catgtggtcagaagctttcaggagagggtgcgtatatttgtacacgacctgaaccttgtttgaa----tgtttacttacagaaacatgtttgtcgatctc |
202 |
Q |
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| T |
28385240 |
catgtggtcagaagctttcaggagagggtgtgtatatttgtacaccacctgaaccttgtttgaatgtttgtttacttacagaaacatgtttgtcgatctc |
28385339 |
T |
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| Q |
203 |
aatcttatttgcggtaagtcgagttggatctgcgagaataaggaatca |
250 |
Q |
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| T |
28385340 |
aatcttatttgcggtaagtcgagttggatctgcgagaatcaggaatca |
28385387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 180
Target Start/End: Complemental strand, 26262195 - 26262047
Alignment:
| Q |
33 |
gtatgagagcagttcgatctagttcagactgttggaatgattgggtag-tttgtgtaagtcgtcttagtgctggtcatgtggtcagaagctttcaggaga |
131 |
Q |
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| T |
26262195 |
gtattagagcagtttgatctagttcggactgtggggatggttgggtagttttgtttaagtcatgttagtgctggtcatgtcctccaaagccttcaagaga |
26262096 |
T |
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| Q |
132 |
gggtgcgtatatttgtacacgacctgaaccttgtttgaatgtttactta |
180 |
Q |
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| T |
26262095 |
tggtgtgtatttttgtagaacactcgaaccttgtttgaatgtttcctta |
26262047 |
T |
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