View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2951_low_3 (Length: 497)
Name: NF2951_low_3
Description: NF2951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2951_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Original strand, 23344263 - 23344731
Alignment:
| Q |
19 |
aattaggctatcttatgacagatggcacacatatgaacaaaatattgaagaagnnnnnnnn-gaataatcttgattaaccagttagaaatgtgttccctt |
117 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23344263 |
aattaggctatcttatgacagatggtacacatatgaacaaaatattgaagaagaaaaaaaaagaataatcttgattaaccagttagaaatgtgttccctt |
23344362 |
T |
|
| Q |
118 |
gttgatcatagaaggaaaaatattgttcaccaataggagggaataacatcttgctttcttcttcatccatcacccacaatggatctaaatatgaataatc |
217 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23344363 |
gttgatcatagaaggaaaaatattggtcaccaataggagggaataacatcttgctttcttcttcatccatcacccacaatggatctaaatatgaataatc |
23344462 |
T |
|
| Q |
218 |
ccatgatgatgtagaaggcattataggacaagataaattattactattctcttcactagttccatcaaaatcaggttgaagaacattgatgtcatcttca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23344463 |
ccatgatgatgtagaaggcattataggacaagataaattattgctattctcttcactagttccatcaaaatcaggttgaagaacattgatgtcatcttca |
23344562 |
T |
|
| Q |
318 |
gacatagcaatatctttccatatatcatccattgagtacccttgttcaatttcttgtacttggtaattttcttcttcagactctttgttggaagcatgtg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23344563 |
gacatagcaatatctttccatatatcatccattgagtacccttgttcaatttcttggacttggtaattttcttcttcagactctttgttggaagcatgtg |
23344662 |
T |
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| Q |
418 |
aatccacaccatggttactatttgagaaatgtgaggattgacaactagaagattgatcaggtgatgatg |
486 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23344663 |
aatccacaccatggttactatttgagaaatgtgaggattgacaactagaagattgatcaggtgatgatg |
23344731 |
T |
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