View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2951_low_30 (Length: 240)

Name: NF2951_low_30
Description: NF2951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2951_low_30
NF2951_low_30
[»] chr7 (10 HSPs)
chr7 (1-240)||(36221629-36221868)
chr7 (1-225)||(36217653-36217877)
chr7 (1-226)||(32727377-32727602)
chr7 (1-203)||(35981815-35982017)
chr7 (1-203)||(36003227-36003429)
chr7 (6-203)||(35977254-35977451)
chr7 (6-203)||(35998666-35998863)
chr7 (6-203)||(35946591-35946788)
chr7 (1-171)||(35939132-35939306)
chr7 (15-183)||(35957808-35957976)
[»] chr2 (1 HSPs)
chr2 (16-226)||(26328685-26328895)
[»] chr1 (2 HSPs)
chr1 (7-226)||(18117867-18118086)
chr1 (7-160)||(18125520-18125673)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 36221868 - 36221629
Alignment:
Q  1 tacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaact 100  Q
    |||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36221868 tacgaaggaacagtactcatcatggaagcaattgagttactacatgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaact 36221769  T
Q  101 caatccattttgcacggtcatcattccatatatcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36221768 caatccattttgcacggtcatcattccatatatcatctaggatgaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaat 36221669  T
Q  201 atcaaaatggttaatgtcttcttggttagccatagcaaca 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36221668 atcaaaatggttaatgtcttcttggttagccatagcaaca 36221629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 36217877 - 36217653
Alignment:
Q  1 tacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaact 100  Q
    |||||||||||| |||||||||||||||||| |||||| |||||||| |||||||| | ||||||| || || |||||||||||||||||| |  |||||    
T  36217877 tacgaaggaacagtacccatcatggaagcaactgagttgctacgtgtggtcactataattttacttcctactgcaccaactttgatcaaatcttccaact 36217778  T
Q  101 caatccattttgcacggtcatcattccatatatcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaat 200  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| ||||| |||||| |||||||| |||||||||||||||||||    
T  36217777 caatccattttgcacgatcatcattccatacatcatctagcacgaggataaacttttggccagatagtttacgtcttagatgaatttgtagttgctcaat 36217678  T
Q  201 atcaaaatggttaatgtcttcttgg 225  Q
     ||| | |||||| | |||||||||    
T  36217677 gtcacagtggttactatcttcttgg 36217653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 32727377 - 32727602
Alignment:
Q  1 tacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaact 100  Q
    ||||| |||| | |||||||||| ||||||| |||||| ||||||||||||||||||| ||| ||| || || |||| ||||| ||||||| || |||||    
T  32727377 tacgagggaatagtacccatcattgaagcaaatgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatcaaatctatcaact 32727476  T
Q  101 caatccattttgcacggtcatcattccatatatcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaat 200  Q
    |||||||||||||||| ||||||||||||||||| |||||||| || | |||||| ||||||| |||||||||||||  |||| ||||||| ||||||||    
T  32727477 caatccattttgcacgatcatcattccatatatcgtctaggacaagcaaaaacttctgaccagcaagtttatgtctttaacgactttgtagctgctcaat 32727576  T
Q  201 atcaaaatggttaatgtcttcttggt 226  Q
    |||||| | ||| |||| ||||||||    
T  32727577 atcaaagttgttgatgttttcttggt 32727602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 35981815 - 35982017
Alignment:
Q  1 tacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaact 100  Q
    |||| |||||||  ||||||||| |||| |||||||||||||||||| ||||| |  | ||| ||| |  || | |||||||||||||||| |  |||||    
T  35981815 tacggaggaacatcacccatcatcgaagaaattgagttactacgtgtagtcaccaaaattttgcttccagctgcgccaactttgatcaaatctttcaact 35981914  T
Q  101 caatccattttgcacggtcatcattccatatatcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaat 200  Q
    |||||||||||||||| ||||||||||  | |||||| |  || || | ||||||||| |  ||||||||||||||||||||| ||||||||||||||||    
T  35981915 caatccattttgcacgatcatcattccgcacatcatccaacacaagtaaaaacttttgtctggaaagtttatgtcttagacgagtttgtagttgctcaat 35982014  T
Q  201 atc 203  Q
    |||    
T  35982015 atc 35982017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 36003227 - 36003429
Alignment:
Q  1 tacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaact 100  Q
    |||| |||||||  ||||||||| |||| |||||||||||||||||| ||||| |  | ||| ||| |  || | |||||||||||||||| |  |||||    
T  36003227 tacggaggaacatcacccatcatcgaagaaattgagttactacgtgtagtcaccaaaattttgcttccagctgcgccaactttgatcaaatctttcaact 36003326  T
Q  101 caatccattttgcacggtcatcattccatatatcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaat 200  Q
    |||||||||||||||| ||||||||||  | |||||| |  || || | ||||||||| |  ||||||||||||||||||||| ||||||||||||||||    
T  36003327 caatccattttgcacgatcatcattccgcacatcatccaacacaagtaaaaacttttgtctggaaagtttatgtcttagacgagtttgtagttgctcaat 36003426  T
Q  201 atc 203  Q
    |||    
T  36003427 atc 36003429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 35977254 - 35977451
Alignment:
Q  6 aggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatc 105  Q
    |||||||  ||||||||| ||||||||||||||||||||||| ||||| || | ||| ||| ||  | |||||||||| ||||||| |  ||| |||| |    
T  35977254 aggaacatcacccatcatcgaagcaattgagttactacgtgttgtcacgataattttgcttcctggtgcaccaacttttatcaaatctttcaattcaagc 35977353  T
Q  106 cattttgcacggtcatcattccatatatcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatc 203  Q
    || |||||||| |||||||||||||  |||||||  ||||  | ||||||||||||||||||||| ||||| |||||| ||  ||||||| |||||||    
T  35977354 cactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccagaaagtttttgtctgagacgacttactagttgcacaatatc 35977451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 35998666 - 35998863
Alignment:
Q  6 aggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatc 105  Q
    |||||||  ||||||||| ||||||||||||||||||||||| ||||| || | ||| ||| ||  | |||||||||| ||||||| |  ||| |||| |    
T  35998666 aggaacatcacccatcatcgaagcaattgagttactacgtgttgtcacgataattttgcttcctggtgcaccaacttttatcaaatctttcaattcaagc 35998765  T
Q  106 cattttgcacggtcatcattccatatatcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatc 203  Q
    || |||||||| |||||||||||||  |||||||  ||||  | ||||||||||||||||||||| ||||| |||||| ||  ||||||| |||||||    
T  35998766 cactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccagaaagtttttgtctgagacgacttactagttgcacaatatc 35998863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 35946591 - 35946788
Alignment:
Q  6 aggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatc 105  Q
    |||||||  ||||||||| |||||||||| |||||| ||||| ||||| || | ||| ||| ||  | |||||||||| ||||||| |  ||| |||| |    
T  35946591 aggaacatcacccatcatcgaagcaattgcgttactgcgtgttgtcaccataattttgcttcctggtgcaccaacttttatcaaatctttcaattcaagc 35946690  T
Q  106 cattttgcacggtcatcattccatatatcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatc 203  Q
    || |||||||| |||||||||||||  |||||||  ||||  | ||||||||||||||||||||| |||||||||||| ||  ||||||| |||||||    
T  35946691 cactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccagaaagtttttgtcttagacgacttactagttgcacaatatc 35946788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 35939132 - 35939306
Alignment:
Q  1 tacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaact 100  Q
    ||||| |||||| | ||| |||| |||||||| || ||||| ||||| ||||| |||| ||| | |||| ||   |||||||| ||||||| |  |||||    
T  35939132 tacgagggaacagtgcccgtcattgaagcaatcgatttactgcgtgttgtcacaatgattttgcattctactgtgccaacttttatcaaatctttcaact 35939231  T
Q  101 caatccattttgcacggtcatc----attccatatatcatctaggacgaggataaacttttgaccagaaagttta 171  Q
    |||||||||||| ||| |||||    ||||||||| |||||||  ||||| | ||||||||||||||||||||||    
T  35939232 caatccattttgaacgatcatccatcattccatatgtcatctaacacgagtaaaaacttttgaccagaaagttta 35939306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 35957808 - 35957976
Alignment:
Q  15 acccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccattttgca 114  Q
    ||||||||| ||||||||||||||||| ||||| ||||| || | ||| ||| ||  | |||||||||| ||||| |  | ||| |||| ||| ||||||    
T  35957808 acccatcattgaagcaattgagttactgcgtgttgtcacgataattttgcttcctggtgcaccaacttttatcaattcgatcaattcaagccactttgca 35957907  T
Q  115 cggtcatcattccatatatcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacga 183  Q
    || |||||||||||||  |||||||  || |  | ||||||||||||||||||||| ||| | ||||||    
T  35957908 cgatcatcattccatacgtcatctaacacaactaaaaacttttgaccagaaagtttttgtttgagacga 35957976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 26328895 - 26328685
Alignment:
Q  16 cccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccattttgcac 115  Q
    |||||||| ||||||||  ||||||||||||| ||||||| || ||| |||||| || |||||||||| |||| || |  ||||||||||||||||| ||    
T  26328895 cccatcatcgaagcaatcaagttactacgtgttgtcactaagattttgctttctactgcaccaacttttatcagatctttcaactcaatccattttgaac 26328796  T
Q  116 ggtcatcattccatatatcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatcaaaatggttaat 215  Q
    ||| ||||| |||||||||||||| |||||| | |||||||| ||| ||||| |||||||| |||||| |   || ||||||||||||||| || | |||    
T  26328795 ggttatcatcccatatatcatctaagacgagtacaaactttttacctgaaagcttatgtctaagacgactcactaattgctcaatatcaaagtgttcaat 26328696  T
Q  216 gtcttcttggt 226  Q
    || ||||||||    
T  26328695 gttttcttggt 26328685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 18117867 - 18118086
Alignment:
Q  7 ggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatcc 106  Q
    |||||| |||||||||| || ||||||||||| || ||||| ||| | |||||||| ||| || ||   |||||||| ||||||| |  |||||| ||||    
T  18117867 ggaacagtacccatcatcgatgcaattgagttgctgcgtgttgtcgccatgactttgcttcctactgtgccaactttaatcaaatctttcaactcgatcc 18117966  T
Q  107 attttgcacggtcatcattccatatatcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatcaaa 206  Q
    ||||| |||  ||||||||||||||||||||||  || || | |||| ||| |||| |||||||| |||| |||||| ||||||| ||||||||||||||    
T  18117967 attttacacaatcatcattccatatatcatctaacacaagtaaaaaccttttaccataaagtttacgtctcagacgactttgtagctgctcaatatcaaa 18118066  T
Q  207 atggttaatgtcttcttggt 226  Q
    |||||| |||| ||||||||    
T  18118067 atggtttatgttttcttggt 18118086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 18125520 - 18125673
Alignment:
Q  7 ggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatcc 106  Q
    |||||| |||||||||| ||||||||||||||| ||||||| ||||| || | ||| ||| ||  |   |||||||| ||||||| |  |||||| ||||    
T  18125520 ggaacattacccatcatcgaagcaattgagttattacgtgttgtcaccataattttgcttcctcttgtgccaacttttatcaaatctttcaactcgatcc 18125619  T
Q  107 attttgcacggtcatcattccatatatcatctaggacgaggataaacttttgac 160  Q
    | |||||||| ||||||||||||| ||||||||  || || | |||||||||||    
T  18125620 actttgcacgatcatcattccatacatcatctaacacaagtaaaaacttttgac 18125673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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