View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2951_low_4 (Length: 452)
Name: NF2951_low_4
Description: NF2951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2951_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Complemental strand, 1542982 - 1542557
Alignment:
| Q |
16 |
aatacaaaccaaacacactaaaagattaaaccaaaacacaaccaaccttccattcacatatattatttggaatcaatagcaccaacatttcaaatggaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1542982 |
aatacaaaccaaacacactaaaagattaaaccaaaacacaaccaaccttccattcacatatattatttggaatcaatagcaccaacatttcaaatggaac |
1542883 |
T |
|
| Q |
116 |
gtgtgtcggtatcacatgtgattatatatattcaaatcaattattttcttaaattattataggtgtcgatctcatatttggcgtcagtgttgtgtatggt |
215 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1542882 |
gtgtgtcggtatcacatgtgattatat----tcaaataaattattttcttaaattattataggtgtcgacatcatatttggcgtcagtgttgtgtatggt |
1542787 |
T |
|
| Q |
216 |
-gttcgtatatgtgtctgcgcttcatatatcaataaaaccctatgcagcaccaacatgaagatgacaaaacacagtgacaagtcaatcccggtaaacatg |
314 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1542786 |
tgttcgtatatgtgtctgtgcttcatatatcaataaaaccctatgcagcaccaacatgaacatgacaaaacacagtgacaagtcaatcccggtaaacatg |
1542687 |
T |
|
| Q |
315 |
taaacatgtcaatgttatagagataaaacccacatagacaaaagaataaatcatgcatttatatattatgatgattactttccgataacctccgcgaatg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1542686 |
taaacatgtcaatgttatagagataaaacccacatagacaaaagaataaatcatgcatttatatattatgatgattactttccgataacctccgcgaatg |
1542587 |
T |
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| Q |
415 |
ttttgatataaccatcgataatttcatctc |
444 |
Q |
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| T |
1542586 |
ttttgatataaccatcgataatttcatctc |
1542557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 32425128 - 32425031
Alignment:
| Q |
25 |
caaacacactaaaagattaaaccaaaacacaaccaaccttccattcacatatattatttggaatcaatagcaccaacatttcaaatggaacgtgtgtc |
122 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||||||| | ||||||| |||||||||||||||||||||| ||||||||| ||||| |
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| T |
32425128 |
caaacacactaaaagattaaacccaaacacaaccaaccatccattcacagacattatttagaatcaatagcaccaacatttctaatggaacgcgtgtc |
32425031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 375 - 444
Target Start/End: Complemental strand, 32424516 - 32424447
Alignment:
| Q |
375 |
atatattatgatgattactttccgataacctccgcgaatgttttgatataaccatcgataatttcatctc |
444 |
Q |
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|||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32424516 |
atatattatggttattactttccgataacctccacgaatgttttgatataaccatcgataatttcatctc |
32424447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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