View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2951_low_5 (Length: 446)
Name: NF2951_low_5
Description: NF2951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2951_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 112 - 249
Target Start/End: Complemental strand, 1193611 - 1193476
Alignment:
| Q |
112 |
ctaattatgtgacgattatattttatatgaaggttggctgaagttctgtataaggagaaacagctgcgtttgaaaaccaaatcaatggagaaaatgggac |
211 |
Q |
| |
|
||||||||||||| ||| ||||||||| ||||||||| ||| |||||||||| ||||| ||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1193611 |
ctaattatgtgacaattttattttata--aaggttggccgaaattctgtataacgagaagcagttgcgtttgaaaactaaatcaatggagaaaatgggac |
1193514 |
T |
|
| Q |
212 |
gaccatttattgaagctgatgtatctggaatgaagtaa |
249 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
1193513 |
gaccatttattgaagctgttgtgtctggaatgaagtaa |
1193476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 190 - 347
Target Start/End: Complemental strand, 1241378 - 1241225
Alignment:
| Q |
190 |
aaatcaatggagaaaatgggacgaccatttattgaagctgatgtatctggaatgaagtaaatgtcaaggtcatgcatatataattaagcaggcttgtact |
289 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||| | ||| ||||||||||| |||||| ||| | ||||||||| ||||| ||||||||| |
|
|
| T |
1241378 |
aaatccatggagaaaatgggacgaccatttgttgaagcagttgtctctggaatgaaataaatgccaaatgtgtctatatataatgaagcatgcttgtact |
1241279 |
T |
|
| Q |
290 |
atat--gttacaagttctctatatatgcatgcatggtgtgaaataaataaaacaatggat |
347 |
Q |
| |
|
|||| ||| |||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
1241278 |
atatacgttgcaagttctctat------atgcatgatgtgaaataaataaaacaatggat |
1241225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 190 - 357
Target Start/End: Complemental strand, 1252091 - 1251928
Alignment:
| Q |
190 |
aaatcaatggagaaaatgggacgaccatttattgaagctgatgtatctggaatgaagtaaatgtcaaggtcatgcatatataattaagcaggcttgtact |
289 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||| | ||| ||||||||||| |||||| ||| | ||||||||| ||||| ||||||||| |
|
|
| T |
1252091 |
aaatccatggagaaaatgggacgaccatttgttgaagcagttgtctctggaatgaaataaatgccaaatgtgtctatatataatgaagcatgcttgtact |
1251992 |
T |
|
| Q |
290 |
atat--gttacaagttctctatatatgcatgcatggtgtgaaataaataaaacaatggatatgtgtcttt |
357 |
Q |
| |
|
|||| ||| |||||||||||| ||||||| ||||||||||||||||||||| || |||| |||| |
|
|
| T |
1251991 |
atatacgttgcaagttctctat------atgcatgatgtgaaataaataaaacaatgtatctgtggcttt |
1251928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 1241494 - 1241380
Alignment:
| Q |
94 |
atcatttaattaata----atgctaattatgtgacgattatattttatatgaaggttggctgaagttctgtataaggagaaacagctgcgtttgaaaacc |
189 |
Q |
| |
|
||||||||||||||| ||| ||| |||||||| |||||||||||| |||||||||||||| ||| || |||||||| ||| ||||||||||||| |
|
|
| T |
1241494 |
atcatttaattaataggaaatgttaactatgtgacaattatattttat--gaaggttggctgaaactctctacaaggagaagcagttgcgtttgaaaacg |
1241397 |
T |
|
| Q |
190 |
aaatcaatggagaaaat |
206 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1241396 |
aaatcaatggagaaaat |
1241380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 1252207 - 1252093
Alignment:
| Q |
94 |
atcatttaattaata----atgctaattatgtgacgattatattttatatgaaggttggctgaagttctgtataaggagaaacagctgcgtttgaaaacc |
189 |
Q |
| |
|
||||||||||||||| ||| ||| |||||||| |||||||||||| |||||||||||||| ||| || |||||||| ||| ||||||||||||| |
|
|
| T |
1252207 |
atcatttaattaataggaaatgttaactatgtgacaattatattttat--gaaggttggctgaaactctctacaaggagaagcagttgcgtttgaaaacg |
1252110 |
T |
|
| Q |
190 |
aaatcaatggagaaaat |
206 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1252109 |
aaatcaatggagaaaat |
1252093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 317 - 412
Target Start/End: Complemental strand, 1195356 - 1195262
Alignment:
| Q |
317 |
tgcatggtgtgaaataaataaaacaatggatatgtgtctttaatgagtgaatatttctagtttgttgcttttcctttaaaatgtattcggtcttgt |
412 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||| |||| ||| | |||||| ||||||| ||| | ||| ||||||||| |||||||| |
|
|
| T |
1195356 |
tgcatggtttgaaataaataaatcaatggatatgtgtctttcatga-tgagtgtttctactttgttgttttccttttcaaatgtatttggtcttgt |
1195262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 1195596 - 1195508
Alignment:
| Q |
108 |
aatgctaattatgtgacgattatattttatatgaaggttggctgaagttctgtataaggagaaacagctgcgtttgaaaaccaaatcaat |
197 |
Q |
| |
|
|||| |||||||||||| ||| | ||| |||||||||||||||| |||| || || ||| | |||||||||||||||||||||||||| |
|
|
| T |
1195596 |
aatgttaattatgtgacaatttttattt-tatgaaggttggctgagattctatacaaagagcagcagctgcgtttgaaaaccaaatcaat |
1195508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 1276281 - 1276196
Alignment:
| Q |
135 |
tatatgaaggttggctgaagttctgtataaggagaaacagctgcgtttgaaaaccaaatcaatggagaaaatgggacgaccattta |
220 |
Q |
| |
|
|||||||||||||||||| |||| || |||||||| ||||||||||||||| ||||| ||||| |||| ||||| ||||||| |
|
|
| T |
1276281 |
tatatgaaggttggctgatattctatacaaggagaaggagctgcgtttgaaaatgaaatcgatggaaaaaaggggacagccattta |
1276196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University