View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2951_low_7 (Length: 441)
Name: NF2951_low_7
Description: NF2951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2951_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 166 - 402
Target Start/End: Complemental strand, 44968722 - 44968487
Alignment:
| Q |
166 |
ctctgtgctatgtctgcatatcagtagttaagcatcaacttggtatactactgcacattaataattggaacctggctacatgcagtaatgtctctaatta |
265 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44968722 |
ctctgtgctgtgtctgcatatcagtagttaagcatcaacttggtgtactactgcacattaataattggaacctggctacatgcagtaatgtctctaatta |
44968623 |
T |
|
| Q |
266 |
tattaattattaattgccgcacaatttttattttataaacgccaaattagcatgaatttaattaatatgtacaatcatatnnnnnnnnnnnnttacacat |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44968622 |
tattaattattaattgccgcacaatttttattttataaacgccaaattagcatgaatttaattaatatgtacaatcatat-aaaaaaaaaaattacacat |
44968524 |
T |
|
| Q |
366 |
acatttaattgcatcttacatattatattgaacattt |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44968523 |
acatttaattgcatcttacatattatattgaacattt |
44968487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 44968871 - 44968766
Alignment:
| Q |
17 |
atgaacactaagattccgactgtctaaactaatgaagcacttgtccaattccagcagacccttacaatgttcaccaaattgtttggctaacgtcattgcc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44968871 |
atgaacactaagattccgactgtctaaactaatgaagcacttgtccaattccagcagacccttacaacgttcaccaaattgtttggctaacgtcattgcc |
44968772 |
T |
|
| Q |
117 |
aactta |
122 |
Q |
| |
|
|||||| |
|
|
| T |
44968771 |
aactta |
44968766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 426
Target Start/End: Complemental strand, 44968468 - 44968427
Alignment:
| Q |
385 |
atattatattgaacatttgtaaaagaattcaatcaatatact |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44968468 |
atattatattgaacatttgtaaaagaattcaattaatatact |
44968427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University