View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2952_low_1 (Length: 506)
Name: NF2952_low_1
Description: NF2952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2952_low_1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 506
Target Start/End: Original strand, 38481752 - 38482241
Alignment:
| Q |
18 |
aatagatactccttacacaaatccatccaactatgcacgttgtataatatcatatactttcaatttataaccacttcccctcacggttccaccaattctc |
117 |
Q |
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| T |
38481752 |
aatagatactcctcacacaaatccatccaagtatgcacgttgtataatatcatatactttcaatttataaccacttcccctcacggtttcaccaattctc |
38481851 |
T |
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| Q |
118 |
ccgaatgtgggatgaaaagttgtcacttgattgctcatatcaacaatttcattccttcctcataccgtcgataactcatccacaatacaatcaatccttc |
217 |
Q |
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| T |
38481852 |
cccgatgtgggatgaatagttgtcacttgattgctcatatcaacaattccattccttcctcataccatcgataactcatccacaatacaatcaatccttc |
38481951 |
T |
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| Q |
218 |
aagtgaattggaggaaaacaagtcacgtgcaacaaactccaactataatcctttccaattcccacacttttgcatggcttcaaagagtacaaaaa----c |
313 |
Q |
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| T |
38481952 |
aagtgaattggaagaaaacaagtcacg---cacaaactccaactataatcctttccaattcccacacttttgcatggcttcaaagagtacaaaaagatgc |
38482048 |
T |
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| Q |
314 |
ccttcaactatgaaaaatacacctaagacagactcaaagaaagagaatctgtttgaaactcatgaactgatannnnnnnaggtggcaagtcttccattct |
413 |
Q |
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| T |
38482049 |
ccttcaactatgaaaaatacacctaagacagactcaaagaaagagaatctgtttgaaactcatgaactgatatttttttaggtggcaagtcttccattct |
38482148 |
T |
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| Q |
414 |
gcttgatgttaagctatgggatgatgagacagacatgaagaagctggaagaagctgttcgcagcgttgaaattcctggtttaacctggggagc |
506 |
Q |
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| T |
38482149 |
gcttgatgttaagccatgggatgatgagacagatatgaagaagctggaagaagctgttcgcagcgttgaaattcctggtttaacctggggagc |
38482241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 393 - 506
Target Start/End: Original strand, 38468828 - 38468941
Alignment:
| Q |
393 |
aggtggcaagtcttccattctgcttgatgttaagctatgggatgatgagacagacatgaagaagctggaagaagctgttcgcagcgttgaaattcctggt |
492 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||| |
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| T |
38468828 |
aggtggcaagtcttccattctgcttgatgttaagccatgggatgatgagacagacatgaagaagctggaagaggctgttcgcaccgttgaaattcccggt |
38468927 |
T |
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| Q |
493 |
ttaacctggggagc |
506 |
Q |
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| T |
38468928 |
ttaacctggggagc |
38468941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 313
Target Start/End: Complemental strand, 51274554 - 51274467
Alignment:
| Q |
227 |
ggaggaaaacaagtcacgtgcaacaaactccaactataatcct-ttccaattcccacacttttgcatggcttcaaagagtacaaaaac |
313 |
Q |
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| T |
51274554 |
ggaggaaaacaagtcacgtgcaacaaactccaactataatcctgttccaattcccacaccttcacaaagcatcgaagagtacaaaaac |
51274467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 467
Target Start/End: Complemental strand, 6174422 - 6174373
Alignment:
| Q |
418 |
gatgttaagctatgggatgatgagacagacatgaagaagctggaagaagc |
467 |
Q |
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| T |
6174422 |
gatgtgaagccatgggatgatgaaaccgacatgaagaagctcgaagaagc |
6174373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 467
Target Start/End: Complemental strand, 25250112 - 25250063
Alignment:
| Q |
418 |
gatgttaagctatgggatgatgagacagacatgaagaagctggaagaagc |
467 |
Q |
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| T |
25250112 |
gatgtgaagccatgggatgatgagaccgacatgaagaaacttgaagaagc |
25250063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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