View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2952_low_2 (Length: 467)
Name: NF2952_low_2
Description: NF2952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2952_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 181 - 463
Target Start/End: Complemental strand, 47591574 - 47591292
Alignment:
| Q |
181 |
ggcaaaaagagagagagaaacaaacgaataacactagaatttgtaaactgtttgtccctttactcactcctttcgccttcttattttatctttatgtgaa |
280 |
Q |
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| T |
47591574 |
ggcaaaaagagagagagaaacaaacgaatcacactagaatttgtaaactgtttgtccctttactcactcctttcgccttcttattttatctttatgtgaa |
47591475 |
T |
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| Q |
281 |
tgaaatcaatatttgccagttggctttgtgtgcatgtgtactacagtgtcagttagtgtagtaaactgcattgggtgagtgattgagagagagaatcaag |
380 |
Q |
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| T |
47591474 |
tgaaatcaatatttgccagttggctttgtgtgcatgtgtactacagtgtcagttagtgtagtaaactgcattgagtgagtgattgagagagagaatcaag |
47591375 |
T |
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| Q |
381 |
tgaagagaaagagatattatacatacatagcagaattaccaattaccatgattccatatatgagactcaacaacataatagtg |
463 |
Q |
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| T |
47591374 |
tgaagagaaagagatattatacatacatagcagaattaccaattaccatgattccatatatgagactcaacaacataatagtg |
47591292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 47591754 - 47591669
Alignment:
| Q |
1 |
aactagtgttgtagagtggtaaaggacctatagaactagagtttctttttctttctttctcttatgcttgttaatgtgtttgtttt |
86 |
Q |
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| T |
47591754 |
aactagtgttgtagagtggtaaaggacctatagaactagagtttctttttttttctttctcttatgcttgttaatgtgtttgtttt |
47591669 |
T |
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