View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2952_low_3 (Length: 404)
Name: NF2952_low_3
Description: NF2952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2952_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 404
Target Start/End: Complemental strand, 14960435 - 14960035
Alignment:
| Q |
8 |
agcaaaggtcatgttcattttcatggtacataaaaaagaaacttcaaatagtgttaccaagtaaatatgtccataagtaagttagttagccaactgcagt |
107 |
Q |
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| T |
14960435 |
agcaaaggtcatgttcattttcatggtacataaaaaagaaacttcaaatagtgttaccaagtaaatatgtccataagtaagttag----ccaactgcagt |
14960340 |
T |
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| Q |
108 |
actcatgattgggaaccat--------gaattgattgctctcagaacaacaatgaaccataaaccaagtatgctgaataaagctacaaagaccactattg |
199 |
Q |
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| T |
14960339 |
actcatgattgggaaccattcaaccatgaattgattgctctcagaacaacaatgaaccataaaccaagtatgctgaataaagctacaaagaccactattg |
14960240 |
T |
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| Q |
200 |
atacaataaccactgtatctgcaaacaacaacagtaacagatgnnnnnnnnnttaaattatggtgtgcaaaattctatcttgttcatttctgtagtttcc |
299 |
Q |
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| T |
14960239 |
aaacaataaccactgtatctgcaaacaacaacagtaacagatgaaaaaaaaattaaattatggtgtgcaaaattctatcttgttcatttctgtagtttcc |
14960140 |
T |
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| Q |
300 |
acaagaaaaataaatgttagcattcttgagaaaatgaagaatgaaaatatactcactttgataaatgcagtttatttcaccctgcagtccacttaggctg |
399 |
Q |
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| T |
14960139 |
acaagaaaaataaatgttagcattcttgagaaaatgaagaatgaaaatatactcactttgataaatgcagtttatttcaccctgcagtccacttaggctg |
14960040 |
T |
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| Q |
400 |
acatc |
404 |
Q |
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| T |
14960039 |
acatc |
14960035 |
T |
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