View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2952_low_5 (Length: 314)

Name: NF2952_low_5
Description: NF2952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2952_low_5
NF2952_low_5
[»] chr1 (11 HSPs)
chr1 (78-303)||(32965990-32966215)
chr1 (1-42)||(5477176-5477217)
chr1 (1-42)||(40596067-40596108)
chr1 (1-42)||(41507207-41507248)
chr1 (1-42)||(49453497-49453538)
chr1 (1-42)||(27687532-27687573)
chr1 (1-42)||(40139132-40139173)
chr1 (1-42)||(43612093-43612134)
chr1 (1-42)||(45272173-45272214)
chr1 (1-42)||(50797797-50797838)
chr1 (1-42)||(51571421-51571462)
[»] chr4 (9 HSPs)
chr4 (1-42)||(39241314-39241355)
chr4 (1-42)||(30778277-30778318)
chr4 (1-42)||(32365680-32365721)
chr4 (4-42)||(41119497-41119535)
chr4 (4-42)||(46173556-46173594)
chr4 (1-42)||(28676165-28676206)
chr4 (1-42)||(42490926-42490967)
chr4 (1-42)||(48326558-48326599)
chr4 (1-42)||(54036542-54036583)
[»] chr8 (9 HSPs)
chr8 (1-39)||(36178273-36178311)
chr8 (1-42)||(5502377-5502418)
chr8 (1-42)||(157073-157114)
chr8 (1-42)||(1796502-1796543)
chr8 (1-42)||(11138913-11138954)
chr8 (1-42)||(14710906-14710947)
chr8 (1-42)||(37392141-37392182)
chr8 (2-42)||(9047084-9047124)
chr8 (2-42)||(44607707-44607747)
[»] chr7 (8 HSPs)
chr7 (1-42)||(2469709-2469750)
chr7 (1-42)||(22330644-22330685)
chr7 (1-42)||(37352003-37352044)
chr7 (1-42)||(41985113-41985154)
chr7 (1-42)||(237030-237071)
chr7 (1-42)||(25887600-25887641)
chr7 (5-42)||(31274557-31274594)
chr7 (1-42)||(43444641-43444682)
[»] chr5 (8 HSPs)
chr5 (1-42)||(6865800-6865841)
chr5 (1-42)||(33567236-33567277)
chr5 (1-43)||(31284407-31284449)
chr5 (1-42)||(372733-372774)
chr5 (1-42)||(13734373-13734414)
chr5 (1-42)||(14206406-14206447)
chr5 (1-42)||(29227723-29227764)
chr5 (1-42)||(33910101-33910142)
[»] chr3 (4 HSPs)
chr3 (1-42)||(47683807-47683848)
chr3 (1-42)||(3484776-3484817)
chr3 (1-42)||(43169766-43169807)
chr3 (2-42)||(3483138-3483178)
[»] chr2 (5 HSPs)
chr2 (1-42)||(25801826-25801867)
chr2 (1-42)||(37966373-37966414)
chr2 (1-40)||(28013975-28014014)
chr2 (1-42)||(8482245-8482286)
chr2 (1-42)||(29795453-29795494)
[»] chr6 (4 HSPs)
chr6 (1-40)||(32149508-32149547)
chr6 (1-42)||(2163708-2163749)
chr6 (1-42)||(2175341-2175382)
chr6 (1-42)||(12441544-12441585)
[»] scaffold0286 (1 HSPs)
scaffold0286 (1-42)||(18660-18701)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-42)||(31613-31654)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 78 - 303
Target Start/End: Complemental strand, 32966215 - 32965990
Alignment:
Q  78 tacaaagtatataataaaatagtcctatatataaaatattaaacattgatcgagacactctttgtggaacaaatttctagccagaagtctctgaaaacca 177  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32966215 tacaaagtatataataaaatactcctatatataaaatattaaacattgatcgagacactctttgtggaacaaatttctagccagaagtctctgaaaacca 32966116  T
Q  178 ctgagaaaattcaccaacaactacgtagtatccacactccaaccttaataaaataaaaacagtctttcacaacattttaatgttctgtctccttccccat 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32966115 ctgagaaaattcaccaacaactacgtagtatccacactccaaccttaataaaataaaaacagtctttcacaacattttaatgttctgtctccttccccat 32966016  T
Q  278 caccatcctcatttatacaccaccta 303  Q
    ||||||||||||||||||||||||||    
T  32966015 caccatcctcatttatacaccaccta 32965990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5477176 - 5477217
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  5477176 tatgagagagaaagttgtcacaaagtggttgtacaaatatca 5477217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40596067 - 40596108
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  40596067 tatgagagagaaagttgtcacaaaatggttgtacaaatatca 40596108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41507207 - 41507248
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  41507207 tatgagagagaaagttgtcacaaaatggttgtacaaatatca 41507248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 49453538 - 49453497
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  49453538 tatgagagagaaagttgtcacaaagtggttgtacaaatatca 49453497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27687532 - 27687573
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    ||||||||| |||||||||||||| |||||| ||||||||||    
T  27687532 tatgagagataaagttgtcacaaaatggttgtacaaatatca 27687573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40139173 - 40139132
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||| ||| |||||| ||||||||||    
T  40139173 tatgagagagaaagttgtcataaaatggttgtacaaatatca 40139132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 43612093 - 43612134
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||| ||| |||||| ||||||||||    
T  43612093 tatgagagagaaagttgtcataaaatggttgtacaaatatca 43612134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45272173 - 45272214
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||| ||| |||||| ||||||||||    
T  45272173 tatgagagagaaagttgtcaaaaagtggttgtacaaatatca 45272214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 50797838 - 50797797
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||||||| || ||| ||||||||||    
T  50797838 tatgagagagaaagttgtcacaaaatgattgtacaaatatca 50797797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 51571462 - 51571421
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||| ||| |||||| ||||||||||    
T  51571462 tatgagagagaaagttgtcaaaaagtggttgtacaaatatca 51571421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39241314 - 39241355
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  39241314 tatgagagagaaagttgtcacaaattggttgtacaaatatca 39241355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30778277 - 30778318
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||||||||||| || ||||||||||    
T  30778277 tatgagagagaaagttgtcacaaattggctgtacaaatatca 30778318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 32365680 - 32365721
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  32365680 tatgagagagaaagttgtcacaaaatggttgtacaaatatca 32365721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 41119497 - 41119535
Alignment:
Q  4 gagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  41119497 gagagagaaagttgtcacaaagtggttgtacaaatatca 41119535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 46173594 - 46173556
Alignment:
Q  4 gagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  46173594 gagagagaaagttgtcacaaagtggttgtacaaatatca 46173556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 28676165 - 28676206
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    ||||| |||||||||||||||||| |||||| ||||||||||    
T  28676165 tatgaaagagaaagttgtcacaaaatggttgtacaaatatca 28676206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42490967 - 42490926
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||| ||| |||||| ||||||||||    
T  42490967 tatgagagagaaagttgtcaaaaagtggttgtacaaatatca 42490926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 48326599 - 48326558
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    ||||||||| |||||||||||||| |||||| ||||||||||    
T  48326599 tatgagagaaaaagttgtcacaaagtggttgtacaaatatca 48326558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 54036542 - 54036583
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    ||||||||| |||||||||||||| |||||| ||||||||||    
T  54036542 tatgagagataaagttgtcacaaaatggttgtacaaatatca 54036583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 36178273 - 36178311
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaata 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  36178273 tatgagagagaaagttgtcacaaattggttgtacaaata 36178311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5502418 - 5502377
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  5502418 tatgagagagaaagttgtcacaaagtggttgtacaaatatca 5502377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 157114 - 157073
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    ||||||||||||||||||| |||| |||||| ||||||||||    
T  157114 tatgagagagaaagttgtcgcaaaatggttgtacaaatatca 157073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1796543 - 1796502
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    ||||||| |||||||||||||||| |||||| ||||||||||    
T  1796543 tatgagaaagaaagttgtcacaaagtggttgtacaaatatca 1796502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11138954 - 11138913
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||||||| | |||| ||||||||||    
T  11138954 tatgagagagaaagttgtcacaaaatagttgtacaaatatca 11138913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14710906 - 14710947
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||||||| || ||| ||||||||||    
T  14710906 tatgagagagaaagttgtcacaaaatgattgtacaaatatca 14710947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37392141 - 37392182
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||| ||| |||||| ||||||||||    
T  37392141 tatgagagagaaagttgtcaaaaaatggttgtacaaatatca 37392182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 9047084 - 9047124
Alignment:
Q  2 atgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    ||||||||||||||||||| ||| |||||| ||||||||||    
T  9047084 atgagagagaaagttgtcaaaaagtggttgtacaaatatca 9047124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 44607747 - 44607707
Alignment:
Q  2 atgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||| || |||||| ||||||||||    
T  44607747 atgagagagaaagttgtcaccaaatggttgtacaaatatca 44607707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2469750 - 2469709
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  2469750 tatgagagagaaagttgtcacaaagtggttgtacaaatatca 2469709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22330644 - 22330685
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  22330644 tatgagagagaaagttgtcacaaagtggttgtacaaatatca 22330685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37352003 - 37352044
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  37352003 tatgagagagaaagttgtcacaaagtggttgtacaaatatca 37352044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41985113 - 41985154
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    ||||||||||||||||||||||||||| ||| ||||||||||    
T  41985113 tatgagagagaaagttgtcacaaattgattgtacaaatatca 41985154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 237071 - 237030
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||    
T  237071 tatgagagataaagttgtcacaaattgattgtacaaatatca 237030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25887641 - 25887600
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||||||| ||| || ||||||||||    
T  25887641 tatgagagagaaagttgtcacaaagtggatgtacaaatatca 25887600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 31274557 - 31274594
Alignment:
Q  5 agagagaaagttgtcacaaattggttggacaaatatca 42  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  31274557 agagaaaaagttgtcacaaattggttgtacaaatatca 31274594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43444682 - 43444641
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||| ||| |||||| ||||||||||    
T  43444682 tatgagagagaaagttgtcataaagtggttgtacaaatatca 43444641  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6865800 - 6865841
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  6865800 tatgagagagaaagttgtcacaaagtggttgtacaaatatca 6865841  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33567236 - 33567277
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  33567236 tatgagagagaaagttgtcacaaagtggttgtacaaatatca 33567277  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 31284407 - 31284449
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatcag 43  Q
    |||||||||||||||||||||||| ||| || |||||||||||    
T  31284407 tatgagagagaaagttgtcacaaaatggatgtacaaatatcag 31284449  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 372733 - 372774
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||||||| |||||| ||||| ||||    
T  372733 tatgagagagaaagttgtcacaaaatggttgtacaaaaatca 372774  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13734373 - 13734414
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||| ||| |||||| ||||||||||    
T  13734373 tatgagagagaaagttgtcataaagtggttgtacaaatatca 13734414  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14206447 - 14206406
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||| ||| |||||| ||||||||||    
T  14206447 tatgagagagaaagttgtcaaaaaatggttgtacaaatatca 14206406  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29227764 - 29227723
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||||||| | |||| ||||||||||    
T  29227764 tatgagagagaaagttgtcacaaagtagttgtacaaatatca 29227723  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33910101 - 33910142
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||| ||| |||||| ||||||||||    
T  33910101 tatgagagagaaagttgtcaaaaaatggttgaacaaatatca 33910142  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 47683848 - 47683807
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  47683848 tatgagagagaaagttgtcacaaaatggttgtacaaatatca 47683807  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3484817 - 3484776
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||| | ||| |||||||||||||||||    
T  3484817 tatgagagagaaagttgtaataaaatggttggacaaatatca 3484776  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 43169766 - 43169807
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    ||||||||| |||||||||||||| |||||| ||||||||||    
T  43169766 tatgagagaaaaagttgtcacaaaatggttgtacaaatatca 43169807  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 3483178 - 3483138
Alignment:
Q  2 atgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||| |||||||| |||||| ||||||||||    
T  3483178 atgagagagaaagtcgtcacaaagtggttgtacaaatatca 3483138  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25801826 - 25801867
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  25801826 tatgagagataaagttgtcacaaattggttgtacaaatatca 25801867  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37966414 - 37966373
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  37966414 tatgagagaaaaagttgtcacaaattggttgtacaaatatca 37966373  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28014014 - 28013975
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatat 40  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  28014014 tatgagagagaaagttgtcaaaaattggttgtacaaatat 28013975  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8482245 - 8482286
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||| ||| |||||| ||||||||||    
T  8482245 tatgagagagaaagttgtcataaagtggttgtacaaatatca 8482286  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29795494 - 29795453
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||| ||||||||||||||||||| |||||| ||||||||||    
T  29795494 tatgtgagagaaagttgtcacaaaatggttgtacaaatatca 29795453  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32149547 - 32149508
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatat 40  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  32149547 tatgagagagaaagttgtcacaaagtggttgtacaaatat 32149508  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2163749 - 2163708
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    ||||||||||||| ||||||||||||| ||| ||||||||||    
T  2163749 tatgagagagaaaattgtcacaaattgattgtacaaatatca 2163708  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2175382 - 2175341
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    ||||||||||||| ||||||||||||| ||| ||||||||||    
T  2175382 tatgagagagaaaattgtcacaaattgattgtacaaatatca 2175341  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12441585 - 12441544
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||||||| | |||| ||||||||||    
T  12441585 tatgagagagaaagttgtcacaaagtagttgtacaaatatca 12441544  T

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Target: scaffold0286 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18660 - 18701
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    ||||||||||||| ||||||||||||| ||| ||||||||||    
T  18660 tatgagagagaaaattgtcacaaattgattgtacaaatatca 18701  T

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Target: scaffold0054 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31613 - 31654
Alignment:
Q  1 tatgagagagaaagttgtcacaaattggttggacaaatatca 42  Q
    |||||||||||||||||||| ||| |||||| ||||||||||    
T  31613 tatgagagagaaagttgtcaaaaaatggttgtacaaatatca 31654  T

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