View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2952_low_6 (Length: 251)

Name: NF2952_low_6
Description: NF2952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2952_low_6
NF2952_low_6
[»] chr7 (2 HSPs)
chr7 (18-251)||(47980207-47980440)
chr7 (39-80)||(48222343-48222384)
[»] chr8 (3 HSPs)
chr8 (25-149)||(24367486-24367610)
chr8 (171-246)||(24367623-24367698)
chr8 (25-143)||(24455103-24455221)
[»] scaffold0027 (1 HSPs)
scaffold0027 (25-218)||(148726-148913)
[»] chr5 (2 HSPs)
chr5 (154-246)||(19135978-19136070)
chr5 (25-128)||(19135858-19135961)
[»] chr1 (3 HSPs)
chr1 (24-80)||(44838275-44838331)
chr1 (212-251)||(44817271-44817310)
chr1 (212-251)||(44834628-44834667)
[»] chr3 (1 HSPs)
chr3 (212-251)||(17570994-17571033)


Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 47980440 - 47980207
Alignment:
Q  18 agaagaatattgacaaggtggattgttgtaaaattgcacccaaacatagtcaaaaagacctgtcttaagggcctctccaagcatagcatcaggaaaagga 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47980440 agaagaatgttgacaaggtggattgttgtaaaattgcacccaaacatagtcaaaaagacctgtcttaagggcctctccaagcatagcatcaggaaaagga 47980341  T
Q  118 cactgaggagcagcagttaagtaaaccttctttccctttttgctataacctgaaaggtactttgcaagatcatcccaatgtaggtttgttcctccttcaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47980340 cactgaggagcagcagttaagtaaaccttctttccctttttgctataacctgaaaggtactttgcaagatcatcccaatgtaggtttgttcctccttcaa 47980241  T
Q  218 tgtcaaaatcaatgccatccaaaacagcatcacc 251  Q
    ||||||||||||||||||||||||||||||||||    
T  47980240 tgtcaaaatcaatgccatccaaaacagcatcacc 47980207  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 48222343 - 48222384
Alignment:
Q  39 attgttgtaaaattgcacccaaacatagtcaaaaagacctgt 80  Q
    ||||||||||||||| ||||||||||||||||| || |||||    
T  48222343 attgttgtaaaattgaacccaaacatagtcaaatagtcctgt 48222384  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 24367486 - 24367610
Alignment:
Q  25 tattgacaaggtggattgttgtaaaattgcacccaaacatagtcaaaaagacctgtcttaagggcctctccaagcatagcatcaggaaaaggacactgag 124  Q
    ||||||||||| || |||||||| ||||| ||||||||||| |||||||| |||||  |||| || | ||| | |  |||||||||||| ||||| ||||    
T  24367486 tattgacaaggagggttgttgtagaattgtacccaaacataatcaaaaagtcctgttgtaagtgcatttcctatccaagcatcaggaaatggacattgag 24367585  T
Q  125 gagcagcagttaagtaaaccttctt 149  Q
    |||| ||||||| |||||| |||||    
T  24367586 gagctgcagttatgtaaactttctt 24367610  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 24367623 - 24367698
Alignment:
Q  171 aaggtactttgcaagatcatcccaatgtaggtttgttcctccttcaatgtcaaaatcaatgccatccaaaacagca 246  Q
    ||||||| | ||||||||| |||||||| || ||| ||||||||| || ||||| ||||||||||| | |||||||    
T  24367623 aaggtacctagcaagatcaccccaatgttggcttgatcctccttcgatatcaaagtcaatgccatcaagaacagca 24367698  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 24455103 - 24455221
Alignment:
Q  25 tattgacaaggtggattgttgtaaaattgcacccaaacatagtcaaaaagacctgtcttaagggcctctccaagcatagcatcaggaaaaggacactgag 124  Q
    ||||||||||  || || ||||| ||||| ||||||||| | |||||||| || ||  |||| || | ||| | |  |||||||||||| ||||||||||    
T  24455103 tattgacaagaagggttattgtagaattgtacccaaacaaaatcaaaaagtcccgttgtaagtgcatttcccaaccaagcatcaggaaatggacactgag 24455202  T
Q  125 gagcagcagttaagtaaac 143  Q
    |||| ||||||| ||||||    
T  24455203 gagctgcagttatgtaaac 24455221  T

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Target: scaffold0027 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 148913 - 148726
Alignment:
Q  25 tattgacaaggtggattgttgtaaaattgcacccaaacatagtcaaaaagacctgtcttaagggcctctccaagcatagcatcaggaaaaggacactgag 124  Q
    ||||||||||| || || ||||| || || ||||||||||| ||||| || |||||  |||| || | ||| | |  |||||||||||| ||||||||||    
T  148913 tattgacaaggagggttattgtagaactgtacccaaacataatcaaagaggcctgttgtaagtgcatttcctatccaagcatcaggaaatggacactgag 148814  T
Q  125 gagcagcagttaagtaaaccttctttccctttttgctataacctgaaaggtactttgcaagatcatcccaatgtaggtttgttcctccttcaat 218  Q
    |||| ||||||| |||||| ||||| ||      | |||| |||  ||||||||| ||||||||| |||||||| ||||||  |||||||||||    
T  148813 gagctgcagttatgtaaactttcttccc------gttataccctttaaggtacttggcaagatcaccccaatgttggtttgaccctccttcaat 148726  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 246
Target Start/End: Original strand, 19135978 - 19136070
Alignment:
Q  154 tttttgctataacctgaaaggtactttgcaagatcatcccaatgtaggtttgttcctccttcaatgtcaaaatcaatgccatccaaaacagca 246  Q
    |||||||| || |||  ||||||| | ||||||||||||||||  ||||||||||||||||| ||||| ||||| |||||||| | |||||||    
T  19135978 tttttgctgtatcctttaaggtacctagcaagatcatcccaataaaggtttgttcctccttcgatgtcgaaatcgatgccatcgagaacagca 19136070  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 19135858 - 19135961
Alignment:
Q  25 tattgacaaggtggattgttgtaaaattgcacccaaacatagtcaaaaagacctgtcttaagggcctctccaagcatagcatcaggaaaaggacactgag 124  Q
    ||||||||||| || || ||||| ||||| ||||||||| | || ||||||||||| || ||||| | ||| | |  ||||||||||||||| || ||||    
T  19135858 tattgacaaggagggttattgtagaattgaacccaaacacaatcgaaaagacctgtttttagggcttttcctatccaagcatcaggaaaagggcattgag 19135957  T
Q  125 gagc 128  Q
    ||||    
T  19135958 gagc 19135961  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 44838331 - 44838275
Alignment:
Q  24 atattgacaaggtggattgttgtaaaattgcacccaaacatagtcaaaaagacctgt 80  Q
    |||||||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||    
T  44838331 atattgacaaggaggattattgtaaaattgtacccaaacaaagtcaaaaagacctgt 44838275  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 44817310 - 44817271
Alignment:
Q  212 cttcaatgtcaaaatcaatgccatccaaaacagcatcacc 251  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  44817310 cttcaatatcaaaatcaattccatccaaaacagcatcacc 44817271  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 44834667 - 44834628
Alignment:
Q  212 cttcaatgtcaaaatcaatgccatccaaaacagcatcacc 251  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  44834667 cttcaatatcaaaatcaattccatccaaaacagcatcacc 44834628  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 17570994 - 17571033
Alignment:
Q  212 cttcaatgtcaaaatcaatgccatccaaaacagcatcacc 251  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  17570994 cttcaatatcaaaatcaattccatccaaaacagcatcacc 17571033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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