View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2952_low_9 (Length: 231)
Name: NF2952_low_9
Description: NF2952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2952_low_9 |
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| [»] scaffold0264 (1 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 20205705 - 20205505
Alignment:
| Q |
14 |
agatgaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20205705 |
agatgaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcag |
20205606 |
T |
|
| Q |
114 |
tgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttc |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20205605 |
tgcacgccggatttgtcgcctaatgattgcagaacctgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttc |
20205506 |
T |
|
| Q |
214 |
t |
214 |
Q |
| |
|
| |
|
|
| T |
20205505 |
t |
20205505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 22099728 - 22099528
Alignment:
| Q |
14 |
agatgaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22099728 |
agatgaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcag |
22099629 |
T |
|
| Q |
114 |
tgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttc |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22099628 |
tgcacgccggatttgtcgcctaatgattgcagaacctgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttc |
22099529 |
T |
|
| Q |
214 |
t |
214 |
Q |
| |
|
| |
|
|
| T |
22099528 |
t |
22099528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 21972262 - 21972069
Alignment:
| Q |
18 |
gaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcagtgca |
117 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||| ||||||||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||| |
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|
| T |
21972262 |
gaagcagcaagtccgcttagtggtgacaagaac---aagtttgcaacaaaagaagcacgagtttcggaaaatcagaccctttacagtctagctcagtgca |
21972166 |
T |
|
| Q |
118 |
cgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttct |
214 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||| |||||||||||||| | ||||| | || |||| ||||||||| || ||||||||||| |
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|
| T |
21972165 |
cgctggatttgtcgcctaatgattgcagaacctgtctcactagtgctattgagacactttcacaaagctgtgttggaaaggttggtgggagatttct |
21972069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 20086381 - 20086185
Alignment:
| Q |
18 |
gaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagatt-cggaaaatcagaccctttactgtctagctcagtgc |
116 |
Q |
| |
|
||||||||| ||||||||| | |||||| ||| |||||||||| || ||||||||| | |||| | ||| |||||||||||||||||||||||||||| |
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|
| T |
20086381 |
gaagcagcaggtccacttactactgacaacaacaagaagtttgccacaaaagaagca-aggatttctgaatctcagaccctttactgtctagctcagtgc |
20086283 |
T |
|
| Q |
117 |
acgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttct |
214 |
Q |
| |
|
|||||||| ||||| || ||||||||||| |||||||| |||||||||||||||| || | | ||||||||||||||||||| |||||| |||| |
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|
| T |
20086282 |
acgccggacttgtcacccggtgattgcagaacctgtctcaatagtgctattgagaaacttcctagctgttgtgatggaaaggtgggtgggagagttct |
20086185 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 22204785 - 22204966
Alignment:
| Q |
18 |
gaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagatt-cggaaaatcagaccctttactgtctagctcagtgc |
116 |
Q |
| |
|
||||||||| ||||||||| || |||||| || ||| ||||| || ||||||||| |||||| | ||| ||||||||||||||| |||||||||||| |
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|
| T |
22204785 |
gaagcagcaggtccacttactgctgacaacaa---gaaatttgccacaaaagaagca-aagatttctgaatctcagaccctttactgcctagctcagtgc |
22204880 |
T |
|
| Q |
117 |
acgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtggg |
202 |
Q |
| |
|
|||||||| ||||| || ||||||||||| |||||| | ||||||||||||| || || | | ||||||||||||||||||| |
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| T |
22204881 |
acgccggacttgtcacccggtgattgcagaacctgtcttaatagtgctattgaggaacttcctagctgttgtgatggaaaggtggg |
22204966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 24385068 - 24385146
Alignment:
| Q |
91 |
agaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattga |
169 |
Q |
| |
|
|||| ||||||| | |||||||||||||||| || ||||| |||||||||||||||| |||||||| |||||||||||| |
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|
| T |
24385068 |
agacgctttactatttagctcagtgcacgccagacttgtcccctaatgattgcagaacctgtctcaatagtgctattga |
24385146 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 20238216 - 20238131
Alignment:
| Q |
96 |
ctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaa |
181 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| ||||||||||||| ||| ||| || |||||||| |||| ||||||| |
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|
| T |
20238216 |
ctttactgtctagctcagtgcacgccagacttgtcgttcaatgattgcagaacctgcctcggttgtgctattaggaaactttcaaa |
20238131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 22132200 - 22132115
Alignment:
| Q |
96 |
ctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaa |
181 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| ||||||||||||| ||| ||| || |||||||| |||| ||||||| |
|
|
| T |
22132200 |
ctttactgtctagctcagtgcacgccagacttgtcgttcaatgattgcagaacctgcctcggttgtgctattaggaaactttcaaa |
22132115 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 169
Target Start/End: Complemental strand, 16334 - 16179
Alignment:
| Q |
14 |
agatgaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcag |
113 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| ||| ||||||||||||| |||||||||| || |||| ||||||||||||| ||||||||||||||| |
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|
| T |
16334 |
agatgaagcagcacgtccacttattggagacataaaaaagaagtttgcaacaaaagaagcacgagtttcgaaaaatcagaccctatactgtctagctcag |
16235 |
T |
|
| Q |
114 |
tgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattga |
169 |
Q |
| |
|
|||||||| || ||||| ||||| ||||||||| ||||||| || ||||||||| |
|
|
| T |
16234 |
tgcacgccagacttgtctcctaacaattgcagaacctgtctctatactgctattga |
16179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 169
Target Start/End: Original strand, 47607 - 47762
Alignment:
| Q |
14 |
agatgaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcag |
113 |
Q |
| |
|
||||||||||||| ||||||||||||| || | ||| ||||||||||||| |||||||||| || |||| |||| |||||||||||||||||||||||| |
|
|
| T |
47607 |
agatgaagcagcacgtccacttattggagatataaaaaagaagtttgcaacaaaagaagcacgagtttcgaaaaaacagaccctttactgtctagctcag |
47706 |
T |
|
| Q |
114 |
tgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattga |
169 |
Q |
| |
|
|||||||| || ||||| ||||| ||||||||| ||||||| || ||||||||| |
|
|
| T |
47707 |
tgcacgccagacttgtctcctaacaattgcagaacctgtctctatactgctattga |
47762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 5199 - 5283
Alignment:
| Q |
85 |
aaaatcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattga |
169 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||| ||||| ||||| ||||||||| ||||||| ||| |||||||| |
|
|
| T |
5199 |
aaaatcagaccctgtactgtctagaacagtgcacgccggacttgtcccctaacaattgcagaacctgtctccatagagctattga |
5283 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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