View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2953_low_1 (Length: 625)
Name: NF2953_low_1
Description: NF2953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2953_low_1 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (4 HSPs) |
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| [»] scaffold0856 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 524; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 8 - 625
Target Start/End: Complemental strand, 27659636 - 27659033
Alignment:
| Q |
8 |
catcatcaatactaccacaatccaaaacagcatttgaactatcctcaaattttcaattgtgggtgcaattggcacaccaaaactgcacaaaatcactcaa |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27659636 |
catcatcaatactaccacaatccaaaacagcatttgaactatccacaaattttcaattgtgggtgcaattggcacaccaaaactgcacaaaatcactcaa |
27659537 |
T |
|
| Q |
108 |
ttagatcaataataagttatattgcaaacatagtgatttacaagcttattgcatcaaatataatgcagcaaaaacatcagaaaaaa-tgtaagcatcaca |
206 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
27659536 |
ttagatcaataataagttatattgcaaacatggtgatttacaagcttattgcatcaaatataatgcagctaaaacatcagaaaaaaatgtaagcatcaca |
27659437 |
T |
|
| Q |
207 |
aacaaaaacattaaatataatttaagcatggactttgttcatatataaacacaaacagcataccagaaaacaggggtggcacaaacagcagaccagaaat |
306 |
Q |
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|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27659436 |
aacaaaaacattaaatataatttaagcaaggactttgttcatata--aacacaaacagcataccagaaaacaggggtggcacaaacagcagaccagaaat |
27659339 |
T |
|
| Q |
307 |
cacaaacaggcctcacaaacattacagacctcccttctcaggccagatagcagaaaaggcccatgcagaaaaacactccctgcaccccctaatatagcag |
406 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27659338 |
cacaaacagc-------------acagacctcccttctcaggccagatagcagaaaaggcccaggcagaaaaacactccctgcaccccctaatatagcag |
27659252 |
T |
|
| Q |
407 |
cactactacagatagcaaaatagtggaataacttgttctctaagactctgaagtccacacttatgaaatcaattcagcaactatattactacctttctct |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27659251 |
cactactacagatagcaaaatagtggaataacttgttctctaagactctgaagtccacacttatgaaatcaattcagcaactatattactacctttctct |
27659152 |
T |
|
| Q |
507 |
tcaagattaagaagttacctctcatatataaatactcaactattcacaatttcaacataaataggtttcactcgaaacataatctactttctcaaagtac |
606 |
Q |
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| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27659151 |
taaagattaagaagttccctctcatatataaatactcaactattcacaatttcaacataaataggtttcactcgaaacataatctactttctcaaagtac |
27659052 |
T |
|
| Q |
607 |
atatcatattcatatctct |
625 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
27659051 |
atatcatattcatatctct |
27659033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 268 - 423
Target Start/End: Complemental strand, 32017413 - 32017255
Alignment:
| Q |
268 |
accagaaaacaggggtggcacaaacagcagaccagaaatcacaaacaggcctcacaaacattacagacctcccttctcaggccagatagcagaaaaggcc |
367 |
Q |
| |
|
||||||||| ||||| || |||||||||||||||||| || ||| |||||||||||||| | |||||||||||| ||||||||||||||||||| ||| |
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| T |
32017413 |
accagaaaaaaggggaggtgcaaacagcagaccagaaagcataaaaaggcctcacaaacagcaaagacctcccttcccaggccagatagcagaaaaagcc |
32017314 |
T |
|
| Q |
368 |
catgcag--aaaaacactccctgca-ccccctaatatagcagcactactacagatagca |
423 |
Q |
| |
|
|| |||| || ||||||||| ||| ||||| || | |||||||||||||||||||||| |
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|
| T |
32017313 |
caggcagtaaacaacactccccgcacccccccaagacagcagcactactacagatagca |
32017255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 8 - 625
Target Start/End: Original strand, 37604440 - 37605044
Alignment:
| Q |
8 |
catcatcaatactaccacaatccaaaacagcatttgaactatcctcaaattttcaattgtgggtgcaattggcacaccaaaactgcacaaaatcactcaa |
107 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||| || |
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| T |
37604440 |
catcatcaatactaccacaatccacaagaacatttgaactatccataaattttcaattgtgggtgaaattggcacaccaaaactgcacaaaattacttaa |
37604539 |
T |
|
| Q |
108 |
ttagatcaataataagttatattgcaaacatagtgatttacaagcttattgcatcaaatataatgcagcaaaaacatcagaaaaaatgtaagcatcacaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
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|
| T |
37604540 |
ttagatcaataataagttatattgcaaacatagtgatttacaagcttattgcatcaaatataatgtagcaaaaacatcagaaacaacgtaagcatcacaa |
37604639 |
T |
|
| Q |
208 |
acaaaaacattaaatataatttaagcatggactttgttcatatataaacacaaacagcataccagaaaacaggggtggcacaaacagcagaccagaaatc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| |
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| T |
37604640 |
acaaaaacattaaatataatttaagcatgaactttgttcatat--aaacacaaacagcataccaaaaaacaggggaggcgcaaacagcagaccagaaatc |
37604737 |
T |
|
| Q |
308 |
acaaacaggcctcacaaacattacagacctcccttctcaggccagatagcagaaaaggcccatgcagaaaaacactccctgcaccccctaatatagcagc |
407 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||| |
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|
| T |
37604738 |
acaaacaggcctcacaaacagcacagacctcccttcccaagccagatagcagaaaaggcccagccataaaaacactccctgcaccccctaagatagtagc |
37604837 |
T |
|
| Q |
408 |
actactacagatagcaaaatagtggaataacttgttctctaagactctgaagtccacacttatgaaatcaattcagcaactatattactacctttctctt |
507 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||| |
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|
| T |
37604838 |
actactacagatagcaaaatagtgaaataacttgttctctaagactctgaagtccacacttatgaaatcaatgcaacaactatattcctacctttctctt |
37604937 |
T |
|
| Q |
508 |
caagattaagaagttacctctcatatataaatactcaactattcacaatttcaacataaataggtttcactcgaaacataatctactttctcaaagtaca |
607 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
37604938 |
caagattatgaagttccctctcatatataaatactcaactattcacaatttcaacataaagaggtttcac-----------tctactttctcaaagtaca |
37605026 |
T |
|
| Q |
608 |
tatcatattcatatctct |
625 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37605027 |
tatcatattcatatctct |
37605044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 38776697 - 38776612
Alignment:
| Q |
83 |
accaaaactgcacaaaatcactcaattagatcaataataagttatattgcaaacatagtgatttacaagcttattgcatcaaatat |
168 |
Q |
| |
|
||||||||||||||||| | ||||| ||||| |||||||||||| |||||||||||| |||||||||||||||| |||| ||||| |
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|
| T |
38776697 |
accaaaactgcacaaaagaagtcaataagatctataataagttatgttgcaaacatagagatttacaagcttatttcatcgaatat |
38776612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 5743228 - 5743129
Alignment:
| Q |
8 |
catcatcaatactaccacaatccaaaacagcatttgaactatcctcaaattttcaattgtgggtgcaattggcacaccaaaactgcacaaaatcactcaa |
107 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||||| || |||| ||| |||||||||||| ||||||| ||| ||||| ||||||||||| |||||| |
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|
| T |
5743228 |
catcatgaatactaccacaatccacaaaagcatttggaccatccatgaatgttcaattgtgggggcaattgacaccccaaatctgcacaaaataactcaa |
5743129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 33360324 - 33360423
Alignment:
| Q |
8 |
catcatcaatactaccacaatccaaaacagcatttgaactatcctcaaattttcaattgtgggtgcaattggcacaccaaaactgcacaaaatcactcaa |
107 |
Q |
| |
|
|||||| ||||||||||| ||||| || |||||||| | ||||| ||| |||||||||||| ||||||| ||| ||||| ||||||||||| |||||| |
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|
| T |
33360324 |
catcatgaatactaccactatccacaaaagcatttggattatccatgaatgttcaattgtgggggcaattgacaccccaaatctgcacaaaataactcaa |
33360423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 530 - 610
Target Start/End: Complemental strand, 25007036 - 25006956
Alignment:
| Q |
530 |
atatataaatactcaactattcacaatttcaacataaataggtttcactcgaaacataatctactttctcaaagtacatat |
610 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||| |||| ||||||||||||||||||| |||||||| |||| |
|
|
| T |
25007036 |
atatataaatactcaactattcacattttcaacataaagaggattcattcgaaacataatctactttttcaaagtatatat |
25006956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 448 - 520
Target Start/End: Complemental strand, 25007314 - 25007242
Alignment:
| Q |
448 |
aagactctgaagtccacacttatgaaatcaattcagcaactatattactacctttctcttcaagattaagaag |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | ||||||| ||||| || |||||||||||| |||| |
|
|
| T |
25007314 |
aagactctgaagtccacacttatgaaatcaatgcaacgcctatattcctaccattttcttcaagattatgaag |
25007242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 23352876 - 23352817
Alignment:
| Q |
340 |
cttctcaggccagatagcagaaaaggcccatgcagaaaaacactccctgcaccccctaat |
399 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||| |
|
|
| T |
23352876 |
cttcccaggccagacagcagaaaaggcccaggaataaaaatactccctgcaccccctaat |
23352817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 288 - 423
Target Start/End: Complemental strand, 25542728 - 25542594
Alignment:
| Q |
288 |
caaacagcagaccagaaatcacaaacaggcctcacaaacattacagacctcccttctcaggccagatagcagaaaaggcccatgcagaaaaacactccct |
387 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| | |||| |||| | |||| |||||| | ||||| |||| ||||||||| |||||| |
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|
| T |
25542728 |
caaacagcagaccagaaaacacaaacaggcctcacaaacagaaaagacttccc-acccaggttagatagaaaaaaagccccaggcagaaaaatactccca |
25542630 |
T |
|
| Q |
388 |
gcaccccctaatatagcagcactactacagatagca |
423 |
Q |
| |
|
|||| |||||| | ||||| |||||| |||||||| |
|
|
| T |
25542629 |
gcactccctaagacagcagtgctactaaagatagca |
25542594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 571 - 670
Alignment:
| Q |
8 |
catcatcaatactaccacaatccaaaacagcatttgaactatcctcaaattttcaattgtgggtgcaattggcacaccaaaactgcacaaaatcactcaa |
107 |
Q |
| |
|
|||||| ||||||||||| ||||| || |||||||| | ||||| ||| |||||||||||| ||||||| ||| ||||| ||||||||||| |||||| |
|
|
| T |
571 |
catcatgaatactaccactatccacaaaagcatttggattatccatgaatgttcaattgtgggggcaattgacaccccaaatctgcacaaaataactcaa |
670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 18084600 - 18084699
Alignment:
| Q |
8 |
catcatcaatactaccacaatccaaaacagcatttgaactatcctcaaattttcaattgtgggtgcaattggcacaccaaaactgcacaaaatcactcaa |
107 |
Q |
| |
|
|||||| ||||||||||| ||||| || |||||||| | ||||| ||| |||||||||||| ||||||| ||| ||||| ||||||||||| |||||| |
|
|
| T |
18084600 |
catcatgaatactaccactatccacaaaagcatttggattatccatgaatgttcaattgtgggggcaattgacaccccaaatctgcacaaaataactcaa |
18084699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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