View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2954_high_5 (Length: 279)
Name: NF2954_high_5
Description: NF2954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2954_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 23041565 - 23041827
Alignment:
| Q |
1 |
cctgcaattcctttggcaaggttctgttttaaggattttgaagatgttcttgttgggaagtacagaccagatctaatagtgggttagtatatcatttaaa |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23041565 |
cctgcaattcctttggcagggttctgttttaaggattttgaagatgttcttgctgggaagtacagaccagatctaatagtgggttagtatatcatttaaa |
23041664 |
T |
|
| Q |
101 |
acatatatttctatttctatttttagacgtattaatgttttcatttaaacttaaataccatttagatgcaattggtgcctttcaagaggtgaccaataca |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23041665 |
acatatatttcaatttctatttttagacgtattaatgttttcatttaaactgaaataccatttagatgcaattggtgcctttcaagaggtgaccaataca |
23041764 |
T |
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| Q |
201 |
aacaggagctcaggaaggctcaaatcaatcacatttcttctcagagatgctaggtatgatatc |
263 |
Q |
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| T |
23041765 |
aacaggagctcaggaaggctcaaatcaatcacatttcttctaagagatgctaggtatgatatc |
23041827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 27587932 - 27588194
Alignment:
| Q |
1 |
cctgcaattcctttggcaaggttctgttttaaggattttgaagatgttcttgttgggaagtacagaccagatctaatagtgggttagtatatcatttaaa |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27587932 |
cctgcaattcctttggcagggttctgttttaaggattttgaagatgttcttgctgggaagtacagaccagatctaatagtgggttagtatatcatttaaa |
27588031 |
T |
|
| Q |
101 |
acatatatttctatttctatttttagacgtattaatgttttcatttaaacttaaataccatttagatgcaattggtgcctttcaagaggtgaccaataca |
200 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27588032 |
acatatatatcaatttctatttttagacgtattaatgttttcatttaaactgaaataccatttagatgcaattggtgcctttcaagaggtgaccaataca |
27588131 |
T |
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| Q |
201 |
aacaggagctcaggaaggctcaaatcaatcacatttcttctcagagatgctaggtatgatatc |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27588132 |
aacaggagctcaggaaggctcaaatcaatcacatttcttctaagagatgctaggtatgatatc |
27588194 |
T |
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