View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2954_high_6 (Length: 277)

Name: NF2954_high_6
Description: NF2954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2954_high_6
NF2954_high_6
[»] scaffold1052 (3 HSPs)
scaffold1052 (100-226)||(771-897)
scaffold1052 (31-101)||(668-738)
scaffold1052 (224-260)||(962-998)
[»] chr2 (4 HSPs)
chr2 (99-226)||(6182526-6182653)
chr2 (42-101)||(6182438-6182497)
chr2 (224-260)||(6182718-6182754)
chr2 (3-35)||(6182389-6182421)
[»] chr1 (3 HSPs)
chr1 (99-226)||(5101261-5101386)
chr1 (31-101)||(5101163-5101232)
chr1 (224-260)||(5101451-5101487)
[»] chr3 (4 HSPs)
chr3 (99-226)||(32356299-32356427)
chr3 (42-92)||(32356211-32356261)
chr3 (224-260)||(32356492-32356528)
chr3 (3-35)||(32356162-32356194)
[»] scaffold0268 (1 HSPs)
scaffold0268 (99-153)||(20592-20646)


Alignment Details
Target: scaffold1052 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 100 - 226
Target Start/End: Original strand, 771 - 897
Alignment:
Q  100 aaataggacacacaaattcattgttgttgttgttgtgggtaaagtggaaaaggaatatgtgttttaaaacttggctttttggtttgatgttggaatctgg 199  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||    
T  771 aaataggacacacaaattcattgttgttgttgttagaggtaaagtggaaaaggaatatgtgttttaaaacttgtttttttggtttgatgttggaatatgg 870  T
Q  200 attcgaaacagcgttgtacccatgtcc 226  Q
    |||||||||||||||||||||||||||    
T  871 attcgaaacagcgttgtacccatgtcc 897  T

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Target: scaffold1052; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 668 - 738
Alignment:
Q  31 attaatggatatacgtctctcattgagttttgtaaaacttgagttttaattaattcaatttgggctttcaa 101  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  668 attaatggatatacgtctttcattgagttttgtaaaacttgagatttaattaattcaatttggactttcaa 738  T

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Target: scaffold1052; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 962 - 998
Alignment:
Q  224 tcctcgtcactccagtgttccgtttgcttctcttcat 260  Q
    |||||||||||||||||||||||||||||||||||||    
T  962 tcctcgtcactccagtgttccgtttgcttctcttcat 998  T

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Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 99 - 226
Target Start/End: Original strand, 6182526 - 6182653
Alignment:
Q  99 caaataggacacacaaattcattgttgttgttgttgtgggtaaagtggaaaaggaatatgtgttttaaaacttggctttttggtttgatgttggaatctg 198  Q
    ||||||||||||||||||||||||||||||||||||  |||| |||| ||||||||||||||||||||||||||  ||||||||||||||||||||| ||    
T  6182526 caaataggacacacaaattcattgttgttgttgttgaaggtagagtgaaaaaggaatatgtgttttaaaacttgtttttttggtttgatgttggaatatg 6182625  T
Q  199 gattcgaaacagcgttgtacccatgtcc 226  Q
    ||||||||||||||||||||||||||||    
T  6182626 gattcgaaacagcgttgtacccatgtcc 6182653  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 6182438 - 6182497
Alignment:
Q  42 tacgtctctcattgagttttgtaaaacttgagttttaattaattcaatttgggctttcaa 101  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  6182438 tacgtctgtcattgagttttgtaaaacttgagttttaattaattcaatttgaactttcaa 6182497  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 6182718 - 6182754
Alignment:
Q  224 tcctcgtcactccagtgttccgtttgcttctcttcat 260  Q
    |||||||||||||||||||||||||||||||||||||    
T  6182718 tcctcgtcactccagtgttccgtttgcttctcttcat 6182754  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 6182389 - 6182421
Alignment:
Q  3 atctcaatcaaattaaattatagaaattattaa 35  Q
    ||||||||||||||||||||||||||| |||||    
T  6182389 atctcaatcaaattaaattatagaaatcattaa 6182421  T

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Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 99 - 226
Target Start/End: Original strand, 5101261 - 5101386
Alignment:
Q  99 caaataggacacacaaattcattgttgttgttgttgtgggtaaagtggaaaaggaatatgtgttttaaaacttggctttttggtttgatgttggaatctg 198  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||  |||||||||||||||  ||||||||||||||||||||||||    
T  5101261 caaataggacacacaaattcattgttgttgttgttgaaggtaaagtggaaaaggaat--gtgttttaaaacttgtttttttggtttgatgttggaatctg 5101358  T
Q  199 gattcgaaacagcgttgtacccatgtcc 226  Q
    |||||| |||||| ||||||||||||||    
T  5101359 gattcggaacagcattgtacccatgtcc 5101386  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 5101163 - 5101232
Alignment:
Q  31 attaatggatatacgtctctcattgagttttgtaaaacttgagttttaattaattcaatttgggctttcaa 101  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5101163 attaatggatatacgtcg-tcattgagttttgtaaaacttgagttttaattaattcaatttggactttcaa 5101232  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 5101451 - 5101487
Alignment:
Q  224 tcctcgtcactccagtgttccgtttgcttctcttcat 260  Q
    |||||||||||||||||||||||||||||||||||||    
T  5101451 tcctcgtcactccagtgttccgtttgcttctcttcat 5101487  T

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Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 99 - 226
Target Start/End: Original strand, 32356299 - 32356427
Alignment:
Q  99 caaataggacacacaaattcattgttgttgttgttgtgggtaaagtggaaaaggaatatgtgttttaaaacttg-gctttttggtttgatgttggaatct 197  Q
    ||||||||||||||||||||||||||||||||||||  |||| |||| ||||||||||||||||||||||||||   ||||| ||||||| |||||||||    
T  32356299 caaataggacacacaaattcattgttgttgttgttgaaggtagagtgaaaaaggaatatgtgttttaaaacttgtttttttttgtttgattttggaatct 32356398  T
Q  198 ggattcgaaacagcgttgtacccatgtcc 226  Q
    |||||||||||||||||||||||||||||    
T  32356399 ggattcgaaacagcgttgtacccatgtcc 32356427  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 32356211 - 32356261
Alignment:
Q  42 tacgtctctcattgagttttgtaaaacttgagttttaattaattcaatttg 92  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  32356211 tacgtctgtcattgagttttgtaaaacttaagttttaattaattcaatttg 32356261  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 32356492 - 32356528
Alignment:
Q  224 tcctcgtcactccagtgttccgtttgcttctcttcat 260  Q
    |||||||||||||||||||| ||||||||||||||||    
T  32356492 tcctcgtcactccagtgttctgtttgcttctcttcat 32356528  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 32356162 - 32356194
Alignment:
Q  3 atctcaatcaaattaaattatagaaattattaa 35  Q
    ||||||||||||||||||||||||||| |||||    
T  32356162 atctcaatcaaattaaattatagaaatcattaa 32356194  T

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Target: scaffold0268 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 20592 - 20646
Alignment:
Q  99 caaataggacacacaaattcattgttgttgttgttgtgggtaaagtggaaaagga 153  Q
    |||||||||||||||| | |||||||||||||||||   ||||| ||||||||||    
T  20592 caaataggacacacaattccattgttgttgttgttggaagtaaaatggaaaagga 20646  T

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