View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2954_low_1 (Length: 354)
Name: NF2954_low_1
Description: NF2954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2954_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 39211196 - 39211524
Alignment:
| Q |
19 |
catctgagatcaattctcataattatgagatttggaatat--tattctcccttatgaactttttcaattctttgcatataagaaaaacagtgcttcagtt |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39211196 |
catctgagatcaattcttataattatgagatttggaatatattattctcccttatgaactttttcaattctttgcatataagaaaaacagtgcttcagtt |
39211295 |
T |
|
| Q |
117 |
atgtacttcataagctatcaattttcatcctgcatctgttacaattaagaacatgtgttaattgccctgcagctgttacatccaatttaagtagnnnnnn |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39211296 |
atgtacttcataagctatcaattttcatcctgcatctgttacaattaagaacatgtgtcaattgccctgcagctgttacatccaatttaagtagaaaaaa |
39211395 |
T |
|
| Q |
217 |
ntgaaacaaatttatgatatcagctatatagtttttccactgcaacatctgttgtcaagattcaattagacatagtgaaattgacttaagtacattatac |
316 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39211396 |
atgaaacaaatttatgctatcagctatatagtttttccactgcaacatctgttgtcaagattcaattagacatagtgaaattgacttaagtacattatac |
39211495 |
T |
|
| Q |
317 |
tttcttatgactatgctttatagtattat |
345 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
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|
| T |
39211496 |
tttcttatgactatgctttattgtattat |
39211524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 30 - 345
Target Start/End: Complemental strand, 27509732 - 27509416
Alignment:
| Q |
30 |
aattctcataattatgagatttggaatattattct-cccttatgaactttttcaattctttgcatataagaaaaacagtgcttcagttatgtacttcata |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
27509732 |
aattctcataattatgagatttggaatattattcttcccttatgaactttttcaattctttgcatataagaaaaatagtgcttcagttatgtacttcata |
27509633 |
T |
|
| Q |
129 |
agctatcaattttcatcctgcatctgttacaattaagaacatgtgttaattgccctgcagctgttacatccaatttaagtagnnnnnnntgaaacaaatt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
27509632 |
agctatcaattttcatcctgcatctgttacaattaagaacatgtgtcaattgccctgcagctgttacatccaatttaagtagaaaaaaatgaaacaaatt |
27509533 |
T |
|
| Q |
229 |
tatgatatcagctatatagtttttccactgcaacatctgttgtcaagattcaattagacatagtgaaattgacttaagtacattatactttcttatgact |
328 |
Q |
| |
|
||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
27509532 |
tatactatcagttatatagtttttcccctgcaacatctgttgtcaagattcaattagacatagtgaaattgactctagtacattatactttcttatgact |
27509433 |
T |
|
| Q |
329 |
atgctttatagtattat |
345 |
Q |
| |
|
||||||||| ||||||| |
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|
| T |
27509432 |
atgctttattgtattat |
27509416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 27271664 - 27271994
Alignment:
| Q |
19 |
catctgagatcaattctcataattatgagatttggaatattattct-cccttatgaactttttcaattctttgcatataagaaaaacagtgcttcagtta |
117 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||| ||||||||||||| |||||| ||| || ||| ||| |
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|
| T |
27271664 |
catctgaattcaattctcataattatgacatttgaaatatcattcttcccttatgaactttttaaattctttgcatacaagaaactcagcgcctcaatta |
27271763 |
T |
|
| Q |
118 |
tgtacttcataagctatcaattttca--tcctgcatctgttacaattaagaacatg-tgttaat--tgccctgcagctgttacatccaatttaagtagnn |
212 |
Q |
| |
|
|||| ||| ||||||||||||||||| || |||||||||||||||||||| ||| || || | | ||||||||||||||||||||||| |||| |
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|
| T |
27271764 |
tgtatttcttaagctatcaattttcagttcttgcatctgttacaattaagatgatgatgacaaacattcactgcagctgttacatccaatttaggtagaa |
27271863 |
T |
|
| Q |
213 |
nnnnntgaaacaaatttatgatatcagctatatagtttttccactgcaacatctgttgtcaagattcaattagacatagtgaaattgacttaagtacatt |
312 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| |||||| |
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|
| T |
27271864 |
aaaa-tgaaacatatttatactatcagctatatagtttttccactgcaacatctgttgtgaagattcaattagacacagtgaaatagacttaaatacatt |
27271962 |
T |
|
| Q |
313 |
atactttcttatgactatgctttatagtatta |
344 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |
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|
| T |
27271963 |
atactttcttatgactatgctttattgtatta |
27271994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 29707193 - 29706863
Alignment:
| Q |
19 |
catctgagatcaattctcataattatgagatttggaatattattct-cccttatgaactttttcaattctttgcatataagaaaaacagtgcttcagtta |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| ||||||||||||| |||||| || || ||| ||| |
|
|
| T |
29707193 |
catctgaattcaattctcataattatgagatttgaaatatcattcttcccttatgaactttttaaattctttgcatacaagaaacttagcgcctcaatta |
29707094 |
T |
|
| Q |
118 |
tgtacttcataagctatcaattttca--tcctgcatctgttacaattaagaacatg-tgttaat--tgccctgcagctgttacatccaatttaagtagnn |
212 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||||||||||||||||||| ||| || || | | |||||| ||||||||| |||||| |||| |
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|
| T |
29707093 |
tgtacttcttaagctatcaattttcagttcttgcatctgttacaattaagaagatgatgaaaaacattcactgcagttgttacatctaatttaggtagaa |
29706994 |
T |
|
| Q |
213 |
nnnnntgaaacaaatttatgatatcagctatatagtttttccactgcaacatctgttgtcaagattcaattagacatagtgaaattgacttaagtacatt |
312 |
Q |
| |
|
| ||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| |||||| |
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|
| T |
29706993 |
aaaatt-aaacatatttatactatcagctatatagtttttccactgcaacatctgttgtgaagattcaattagacacagtgaaatagacttaaatacatt |
29706895 |
T |
|
| Q |
313 |
atactttcttatgactatgctttatagtatta |
344 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |
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|
| T |
29706894 |
atactttcttatgactatgctttattgtatta |
29706863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 42093282 - 42092950
Alignment:
| Q |
19 |
catctgagatcaattctcataattatgagatttggaatattattc-tcccttatgaactttttcaattctttgcatataagaaaaacagtgcttcagtta |
117 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
42093282 |
catctgagttcatttctcataattatgagatttggaatatcatttgtcccttatgaactttctcaattctttgcatataagaaaaatagtgcttcaatta |
42093183 |
T |
|
| Q |
118 |
tgtacttcataagctatcaattttca--tcctgcatctgttacaattaagaacat--gtgttaattgccctgcagctgttacatccaatttaagta-gnn |
212 |
Q |
| |
|
||||||||| | |||||||||||| | || ||||| ||||||||||| | |||| || | |||||||||| ||||||||||||||||| |||| | |
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|
| T |
42093182 |
tgtacttcaaatgctatcaattttgagttcatgcatatgttacaattaggcacatgagtatcaattgccctgtggctgttacatccaatttcagtaggaa |
42093083 |
T |
|
| Q |
213 |
nnnnntgaaacaaatttatgatatcagctatatagtttttccactgcaacatctgttgtcaagattcaattagacatagtgaaattgacttaagtacatt |
312 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||| || ||||||||||||||||||| |||||||||||| ||||||| || ||| |
|
|
| T |
42093082 |
aaaaatgaaacaaatttataccatcagctttatagtttttccactgcagcacatgttgtcaagattcaattaaacatagtgaaatagacttaaatatatt |
42092983 |
T |
|
| Q |
313 |
atactttcttatgactatgctttatagtattat |
345 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||| |
|
|
| T |
42092982 |
ataccttcttatgactatactttactgtattat |
42092950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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