View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2954_low_4 (Length: 309)

Name: NF2954_low_4
Description: NF2954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2954_low_4
NF2954_low_4
[»] chr3 (5 HSPs)
chr3 (18-309)||(32355868-32356159)
chr3 (19-69)||(23379337-23379387)
chr3 (19-58)||(10343335-10343374)
chr3 (19-112)||(44384519-44384612)
chr3 (19-62)||(42996325-42996368)
[»] chr2 (7 HSPs)
chr2 (18-309)||(6182096-6182386)
chr2 (19-122)||(6197920-6198023)
chr2 (19-102)||(5142514-5142597)
chr2 (19-87)||(6183090-6183158)
chr2 (19-68)||(6198897-6198946)
chr2 (19-67)||(17946846-17946894)
chr2 (19-87)||(42946444-42946512)
[»] scaffold1052 (2 HSPs)
scaffold1052 (18-309)||(334-624)
scaffold1052 (19-87)||(1541-1609)
[»] chr1 (7 HSPs)
chr1 (133-309)||(5100943-5101119)
chr1 (19-112)||(4530198-4530291)
chr1 (19-80)||(37689904-37689965)
chr1 (19-87)||(5101826-5101894)
chr1 (19-86)||(22425497-22425564)
chr1 (19-86)||(22862576-22862643)
chr1 (19-61)||(45597629-45597671)
[»] chr5 (7 HSPs)
chr5 (44-120)||(326223-326299)
chr5 (19-77)||(6353689-6353747)
chr5 (43-115)||(17591331-17591404)
chr5 (79-119)||(36912935-36912975)
chr5 (19-77)||(30003551-30003609)
chr5 (79-119)||(17590630-17590670)
chr5 (88-119)||(36912317-36912348)
[»] chr4 (11 HSPs)
chr4 (48-119)||(19129558-19129630)
chr4 (19-102)||(49708685-49708768)
chr4 (18-60)||(52916699-52916741)
chr4 (48-120)||(231991-232063)
chr4 (19-63)||(17088717-17088761)
chr4 (19-63)||(17096692-17096736)
chr4 (20-62)||(22255618-22255660)
chr4 (18-80)||(55880535-55880597)
chr4 (19-87)||(24472582-24472650)
chr4 (19-67)||(32893609-32893657)
chr4 (19-67)||(49346111-49346159)
[»] chr8 (7 HSPs)
chr8 (19-122)||(510458-510561)
chr8 (19-122)||(8491473-8491576)
chr8 (19-76)||(1488472-1488529)
chr8 (19-62)||(31694167-31694210)
chr8 (19-62)||(45163117-45163160)
chr8 (19-76)||(10501898-10501955)
chr8 (23-84)||(45162251-45162312)
[»] chr7 (6 HSPs)
chr7 (79-119)||(14735422-14735462)
chr7 (19-69)||(9378734-9378784)
chr7 (19-112)||(37692849-37692942)
chr7 (79-119)||(14736113-14736153)
chr7 (46-102)||(10200127-10200183)
chr7 (19-63)||(36661690-36661734)
[»] scaffold1657 (1 HSPs)
scaffold1657 (18-110)||(913-1005)
[»] chr6 (1 HSPs)
chr6 (19-86)||(6841932-6841999)
[»] scaffold0129 (1 HSPs)
scaffold0129 (56-113)||(43167-43224)


Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 32355868 - 32356159
Alignment:
Q  18 acatttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaatttaagatgaacattgatcttatgatagtctcttcaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32355868 acatttagggtgggtaagggaaagatttttccaccataggaaagtaggttttgaccattagatttaagatgaacattgatcttatgatagtctcttcaca 32355967  T
Q  118 ctagannnnnnnnccactttcttctaccaccgttgtcttgtctatgtgtgtgcctttttccagaaaccatggttccaagttccaacaaactctacacatc 217  Q
    |||||        ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  32355968 ctagattttttttccactttcttctaccaccgttatcttgtctatgtgtgtgcctttttccagaaaccatggttccaagttccaacaaactctacacatt 32356067  T
Q  218 aacaatctatttttccatttggttgaaagtatttgatgtctttatggtataactataaacatatggtttttcaatttcatctcattcctttg 309  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32356068 aacaatctatttttccatttggctgaaagtatttgatgtctttatggtataactataaacatatgatttttcaatttcatctcattcctttg 32356159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 23379337 - 23379387
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagatttt 69  Q
    |||||||||||||||||||||||||||| |||| |||||||||||| ||||    
T  23379337 catttagggtgggtaagggaaagattttcccactataggaaagtagctttt 23379387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 10343335 - 10343374
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccatagga 58  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  10343335 catttagggtgggtgagggaaagatttttccaccatagga 10343374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 44384519 - 44384612
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaatttaagatgaacattgatcttatgatagtctct 112  Q
    |||||||||||||| ||| ||||| ||| ||| ||||| ||||||| |||| ||||||| ||| || |  |||||||||| ||| |||||||||    
T  44384519 catttagggtgggtgaggaaaagaatttcccatcatagaaaagtagcttttaaccattagattaaatagaaacattgatcatattatagtctct 44384612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 42996368 - 42996325
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagt 62  Q
    |||||||| ||||||||||||||||||| ||||||||| |||||    
T  42996368 catttaggatgggtaagggaaagattttcccaccatagaaaagt 42996325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 6182096 - 6182386
Alignment:
Q  18 acatttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaatttaagatgaacattgatcttatgatagtctcttcaca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  6182096 acatttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattagatttaagatgaacattgatcttatgatagtctcttca-a 6182194  T
Q  118 ctagannnnnnnnccactttcttctaccaccgttgtcttgtctatgtgtgtgcctttttccagaaaccatggttccaagttccaacaaactctacacatc 217  Q
    ||| |        ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6182195 ctaaaatttttttccactttcttctaccaccgttatcttgtctatgtgtgtgtctttttccagaaaccatggttccaagttccaacaaactctacacatc 6182294  T
Q  218 aacaatctatttttccatttggttgaaagtatttgatgtctttatggtataactataaacatatggtttttcaatttcatctcattcctttg 309  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6182295 aacaatctatttttccatttggctgaaagtatttgatgtctttatggtataactataaacatatgatttttcaatttcatctcattcctttg 6182386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 6197920 - 6198023
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaatttaagatgaacattgatcttatgatagtctcttcacac 118  Q
    |||||||||||||||||||||||| ||  |||  || ||||||||| |||| ||||||||||| || | ||||| ||||||||| ||  |||||||| ||    
T  6197920 catttagggtgggtaagggaaagaattccccattatgggaaagtagtttttaaccattaaattaaataggaacactgatcttattattttctcttcatac 6198019  T
Q  119 taga 122  Q
    ||||    
T  6198020 taga 6198023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 5142597 - 5142514
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaatttaagatgaacattgatcttat 102  Q
    |||||||||||||| ||||||||| |||||||||||   |||||||||| || |||||| ||| |||| |||||| ||| ||||    
T  5142597 catttagggtgggtgagggaaagaattttccaccatgaaaaagtagattatgtccattagattaaagaggaacatagattttat 5142514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 6183158 - 6183090
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaatttaagat 87  Q
    |||||||||||||||||||||| | ||  ||||||| | ||| ||||||| |||||||| |||||||||    
T  6183158 catttagggtgggtaagggaaaaagttacccaccatggaaaaatagatttagaccattagatttaagat 6183090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 6198946 - 6198897
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattt 68  Q
    |||||||||||||| ||||||||| ||| ||| ||||||||||| |||||    
T  6198946 catttagggtgggtgagggaaagaatttcccatcataggaaagttgattt 6198897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 17946846 - 17946894
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagatt 67  Q
    |||||||||||||| ||||||||| ||||||| ||| ||||||| ||||    
T  17946846 catttagggtgggtgagggaaagaattttccatcatgggaaagttgatt 17946894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 42946512 - 42946444
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaatttaagat 87  Q
    ||||||||||||| | |||||||| ||| ||||||||  ||| ||| ||| |||||||| |||||||||    
T  42946512 catttagggtgggaatgggaaagagtttcccaccatacaaaaatagctttcgaccattagatttaagat 42946444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1052 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 334 - 624
Alignment:
Q  18 acatttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaatttaagatgaacattgatcttatgatagtctcttcaca 117  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  334 acatttagggtgggtaaggaaaagattttcccaccataggaaagtaggttttgaccattagatttaagatgaacattgatcttatgatagtctcttcaca 433  T
Q  118 ctagannnnnnnnccactttcttctaccaccgttgtcttgtctatgtgtgtgcctttttccagaaaccatggttccaagttccaacaaactctacacatc 217  Q
      |||        ||||||||||||||||||||| | ||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||    
T  434 taagattttttt-ccactttcttctaccaccgttatattgtctatgtgtgtgcctttttccaaaatccatggttccaaattccaacaaactctacacatc 532  T
Q  218 aacaatctatttttccatttggttgaaagtatttgatgtctttatggtataactataaacatatggtttttcaatttcatctcattcctttg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  533 aacaatctatttttccatttggttgaaagtatttgatgtctttatggtataactataaacatatggtttttcaatttcatctcattcctttg 624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1052; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 1609 - 1541
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaatttaagat 87  Q
    |||||||||||||||||||||||| ||  ||||||| ||||| ||||||| |||||||| |||||||||    
T  1609 catttagggtgggtaagggaaagagttacccaccattggaaaatagatttagaccattagatttaagat 1541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 133 - 309
Target Start/End: Original strand, 5100943 - 5101119
Alignment:
Q  133 actttcttctaccaccgttgtcttgtctatgtgtgtgcctttttccagaaaccatggttccaagttccaacaaactctacacatcaacaatctatttttc 232  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5100943 actttcttctaccaccgttatcttgtctatgtgtgtgccttttttcagaaaccatggttccaagttccaacaaactctacacatcaacaatctatttttc 5101042  T
Q  233 catttggttgaaagtatttgatgtctttatggtataactataaacatatggtttttcaatttcatctcattcctttg 309  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5101043 catttggctgaaagtatttgatgtctttatggtataactataaacatatggtttttcaatttcatctcattcctttg 5101119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 4530198 - 4530291
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaatttaagatgaacattgatcttatgatagtctct 112  Q
    |||||||||||||| ||||||||| ||| ||| ||||| ||||||| |||| ||||||| ||| || |  |||||||||| ||| |||||||||    
T  4530198 catttagggtgggtgagggaaagaatttcccatcatagaaaagtagcttttaaccattagattaaatagaaacattgatcatattatagtctct 4530291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 37689965 - 37689904
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaat 80  Q
    |||||||||||||||||||||||| ||| ||| ||||  ||||| |||||||||||||||||    
T  37689965 catttagggtgggtaagggaaagagtttcccatcataaaaaagttgattttgaccattaaat 37689904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 5101894 - 5101826
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaatttaagat 87  Q
    |||||||||||||||||| ||||| ||  ||||||| ||||| ||||||| |||||||| |||||||||    
T  5101894 catttagggtgggtaaggtaaagagttacccaccatgggaaaatagatttagaccattagatttaagat 5101826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 22425564 - 22425497
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaatttaaga 86  Q
    |||||||| ||||| ||||||||| ||| |||||||||||||||| ||| ||||||||| ||| ||||    
T  22425564 catttaggatgggtgagggaaagaatttcccaccataggaaagtatattatgaccattagattaaaga 22425497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 22862643 - 22862576
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaatttaaga 86  Q
    |||||||| ||||| ||||||||| ||| |||||||||||||||| ||| || |||||| ||| ||||    
T  22862643 catttaggatgggtgagggaaagaatttcccaccataggaaagtatattatggccattagattaaaga 22862576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 45597629 - 45597671
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaag 61  Q
    |||||||||||||| ||||||||| ||| ||||||||||||||    
T  45597629 catttagggtgggtgagggaaagaatttcccaccataggaaag 45597671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 326299 - 326223
Alignment:
Q  44 ttttccaccataggaaagtagattttgaccattaaatttaagatgaacattgatcttatgatagtctcttcacacta 120  Q
    ||||||||||| | ||||||  ||||||||||||||||||||||||||||||||||||| || ||||  ||||||||    
T  326299 ttttccaccatggaaaagtaagttttgaccattaaatttaagatgaacattgatcttatcatggtcttgtcacacta 326223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 6353689 - 6353747
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccatta 77  Q
    |||||||||||||| ||||||||||||| ||| |||||||||||| ||||| |||||||    
T  6353689 catttagggtgggtgagggaaagattttcccatcataggaaagtaaattttaaccatta 6353747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 17591404 - 17591331
Alignment:
Q  43 tttttccaccataggaaagtagattttga-ccattaaatttaagatgaacattgatcttatgatagtctcttca 115  Q
    |||||||||||| ||||||| | |||||| |||||  |||||||| ||||||||||||||| ||||||||||||    
T  17591404 tttttccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttataatagtctcttca 17591331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 36912975 - 36912935
Alignment:
Q  79 atttaagatgaacattgatcttatgatagtctcttcacact 119  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  36912975 atttaagaggaacattgatcttatgatagtctcttcacact 36912935  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 30003609 - 30003551
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccatta 77  Q
    |||||||||||||||||||||||| ||| | ||||||  ||||| ||||||||||||||    
T  30003609 catttagggtgggtaagggaaagagtttcctaccataaaaaagttgattttgaccatta 30003551  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 17590630 - 17590670
Alignment:
Q  79 atttaagatgaacattgatcttatgatagtctcttcacact 119  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  17590630 atttaagaggaacattgatcttatgataatctcttcacact 17590670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 36912317 - 36912348
Alignment:
Q  88 gaacattgatcttatgatagtctcttcacact 119  Q
    ||||||||||||||||||||||||||||||||    
T  36912317 gaacattgatcttatgatagtctcttcacact 36912348  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 19129558 - 19129630
Alignment:
Q  48 ccaccataggaaagtagattttga-ccattaaatttaagatgaacattgatcttatgatagtctcttcacact 119  Q
    ||||||| ||||||| | |||||| |||||  |||||||| ||||||||||||||||||||||||||||||||    
T  19129558 ccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttatgatagtctcttcacact 19129630  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 49708768 - 49708685
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaatttaagatgaacattgatcttat 102  Q
    |||||||||||||| ||||||||| ||| ||||||| | |||||||||| || |||||| ||| |||| |||||| ||| ||||    
T  49708768 catttagggtgggtgagggaaagaatttcccaccatggaaaagtagattatgcccattagattaaagaggaacatagattttat 49708685  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 52916741 - 52916699
Alignment:
Q  18 acatttagggtgggtaagggaaagatttttccaccataggaaa 60  Q
    ||||||||||||||||||||||||||| ||||||||| |||||    
T  52916741 acatttagggtgggtaagggaaagattcttccaccatgggaaa 52916699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 232063 - 231991
Alignment:
Q  48 ccaccataggaaagtagattttgaccattaaatttaagatgaacattgatcttatgatagtctcttcacacta 120  Q
    ||||||| |||||||| ||||| ||||||| ||  | || ||||||||||||||| ||||||||| |||||||    
T  232063 ccaccatgggaaagtaaattttaaccattagataaatgaggaacattgatcttatcatagtctctccacacta 231991  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 17088761 - 17088717
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagta 63  Q
    |||||||||||||| ||||||||| || |||||||||||||||||    
T  17088761 catttagggtgggtgagggaaagaattctccaccataggaaagta 17088717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 17096736 - 17096692
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagta 63  Q
    |||||||||||||| ||||||||| || |||||||||||||||||    
T  17096736 catttagggtgggtgagggaaagaattctccaccataggaaagta 17096692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 22255618 - 22255660
Alignment:
Q  20 atttagggtgggtaagggaaagatttttccaccataggaaagt 62  Q
    ||||||||||||| |||||||| |||||||||||| |||||||    
T  22255618 atttagggtgggtgagggaaagctttttccaccatgggaaagt 22255660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 55880597 - 55880535
Alignment:
Q  18 acatttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaat 80  Q
    |||||||||||||| |||||||||| ||  |||  |||| ||||| |||||||||||||||||    
T  55880597 acatttagggtgggcaagggaaagaattccccattatagaaaagttgattttgaccattaaat 55880535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 24472650 - 24472582
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaatttaagat 87  Q
    ||||||||||||| |  ||||||| ||| ||||| || |||| ||| |||||||||||| |||||||||    
T  24472650 catttagggtgggaataggaaagagtttcccaccgtaagaaaatagtttttgaccattagatttaagat 24472582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 32893609 - 32893657
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagatt 67  Q
    |||||||||||||| ||||||||| ||||||| ||| ||||||| ||||    
T  32893609 catttagggtgggtgagggaaagaattttccatcatgggaaagttgatt 32893657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 49346111 - 49346159
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagatt 67  Q
    |||||||||||||| ||||||||| ||||||| ||| ||||||| ||||    
T  49346111 catttagggtgggtgagggaaagaattttccatcatgggaaagttgatt 49346159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 510458 - 510561
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaatttaagatgaacattgatcttatgatagtctcttcacac 118  Q
    ||||||| |||||||||||||||| ||  |||  || ||||||||| |||| ||||||||||| || | ||||| ||||||||| ||||||||| || ||    
T  510458 catttagagtgggtaagggaaagaattccccattatgggaaagtagtttttaaccattaaattaaataggaacactgatcttattatagtctctccatac 510557  T
Q  119 taga 122  Q
    ||||    
T  510558 taga 510561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 8491473 - 8491576
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaatttaagatgaacattgatcttatgatagtctcttcacac 118  Q
    |||||||||||||| ||||||||||||| |||| ||||||||| | ||||  |||| || ||| ||||  ||||||||| |||  ||||||||| |||||    
T  8491473 catttagggtgggtgagggaaagattttcccactataggaaagcaaatttataccactagattaaagagaaacattgattttaacatagtctctccacac 8491572  T
Q  119 taga 122  Q
    ||||    
T  8491573 taga 8491576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 1488529 - 1488472
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccatt 76  Q
    |||||||| |||| | |||||||| ||||||||||||||||||| ||||| |||||||    
T  1488529 catttaggatgggaaggggaaagagttttccaccataggaaagttgatttggaccatt 1488472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 31694167 - 31694210
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagt 62  Q
    ||||||||||||||| ||| |||||||| |||||||||||||||    
T  31694167 catttagggtgggtagggggaagattttcccaccataggaaagt 31694210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 45163160 - 45163117
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagt 62  Q
    |||||||||||||| ||||||||||||| ||| |||||||||||    
T  45163160 catttagggtgggtgagggaaagattttcccatcataggaaagt 45163117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 10501955 - 10501898
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccatt 76  Q
    ||||||||||||| | || ||||||||||| ||||| ||||||||  |||||||||||    
T  10501955 catttagggtgggaagggaaaagatttttctaccatgggaaagtaatttttgaccatt 10501898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 45162251 - 45162312
Alignment:
Q  23 tagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaatttaa 84  Q
    |||||||||| ||||||||| ||| || |||||||||||  |||||| ||||| ||||||||    
T  45162251 tagggtgggtgagggaaagaatttccctccataggaaagctgattttaaccatcaaatttaa 45162312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 14735422 - 14735462
Alignment:
Q  79 atttaagatgaacattgatcttatgatagtctcttcacact 119  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  14735422 atttaagaggaacattgatcttatgatagtctcttcacact 14735462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 9378734 - 9378784
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagatttt 69  Q
    ||||||||||||| | |||||||||||||||||||| ||||||| ||||||    
T  9378734 catttagggtgggaaggggaaagatttttccaccatgggaaagttgatttt 9378784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 37692849 - 37692942
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaatttaagatgaacattgatcttatgatagtctct 112  Q
    |||||||||||||| ||||||||| ||| ||| ||||| ||||||| |||| ||||||  ||| || |  |||||||||| ||| |||||||||    
T  37692849 catttagggtgggtgagggaaagaatttcccatcatagaaaagtagcttttaaccattggattaaatagaaacattgatcatattatagtctct 37692942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 14736153 - 14736113
Alignment:
Q  79 atttaagatgaacattgatcttatgatagtctcttcacact 119  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  14736153 atttaagaggaacattgatcttatgataatctcttcacact 14736113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 10200127 - 10200183
Alignment:
Q  46 ttccaccataggaaagtagattttgaccattaaatttaagatgaacattgatcttat 102  Q
    ||||||||||||||||||  ||  |||||||| |||||||| || ||||||||||||    
T  10200127 ttccaccataggaaagtaagttgcgaccattagatttaagaggagcattgatcttat 10200183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 36661690 - 36661734
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagta 63  Q
    |||||||||||||| ||||||||| ||| ||||||| ||||||||    
T  36661690 catttagggtgggtgagggaaagaatttcccaccatgggaaagta 36661734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1657 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1657
Description:

Target: scaffold1657; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 913 - 1005
Alignment:
Q  18 acatttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaatttaagatgaacattgatcttatgatagtct 110  Q
    ||||||||||||| | ||||||||||||| |||| || |||||||| |||| | |||||| ||| |||| || ||| ||| |||| |||||||    
T  913 acatttagggtggatgagggaaagattttcccactattggaaagtaaatttaggccattacattaaagaggagcatagattttattatagtct 1005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 6841999 - 6841932
Alignment:
Q  19 catttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattaaatttaaga 86  Q
    |||||||| ||||| ||||||||| ||| |||||||||||||||| ||| || |||||| ||| ||||    
T  6841999 catttaggatgggtgagggaaagaatttcccaccataggaaagtatattatggccattagattaaaga 6841932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 43224 - 43167
Alignment:
Q  56 ggaaagtagattttgaccattaaatttaagatgaacattgatcttatgatagtctctt 113  Q
    |||||||| || || ||||||||||| |||| |||||||||| |||| ||||||||||    
T  43224 ggaaagtaaatcttaaccattaaattaaagaggaacattgattttattatagtctctt 43167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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