View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2954_low_5 (Length: 298)

Name: NF2954_low_5
Description: NF2954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2954_low_5
NF2954_low_5
[»] chr3 (1 HSPs)
chr3 (5-284)||(44343951-44344244)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 284
Target Start/End: Complemental strand, 44344244 - 44343951
Alignment:
Q  5 ttgtaagtaacaatgcattgtcttacttatcaaataatttctatcttgaattttgaattgatgattgtcattgtctctcaaatgcacgcatgcatgcatg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44344244 ttgtaagtaacaatgcattgtcttacttatcaaataatttctatcttgaattttgaattgatgattgtcattgtctctcaaatgcacgcatgcatgcatg 44344145  T
Q  105 cattatatatattcttaaatttagctatcataataaaatgtggtacactaactcaggaactaattgctaattaattaacctttgatcagtgaaaagaaga 204  Q
    ||||||||    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44344144 cattatat----tcttaaatttagctatcataataaaatgtggtacactaactaaggaactaattgctaattaattaacctttgatcagtgaaaagaaga 44344049  T
Q  205 tgtctggtgtatctgt------------------agcaccacaaactccaggcataaaagcaaaccagcgatcagaagcaccttctgcaggtggaatg 284  Q
    ||||||||||||||||                  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44344048 tgtctggtgtatctgtagcaacagctcctccaacagcaccacaaactccaggcacaaaagcaaaccagcgatcagaagcaccttctgcaggtggaatg 44343951  T

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