View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2955_high_1 (Length: 1129)
Name: NF2955_high_1
Description: NF2955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2955_high_1 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: scaffold0082 (Bit Score: 177; Significance: 8e-95; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 177; E-Value: 8e-95
Query Start/End: Original strand, 258 - 442
Target Start/End: Original strand, 28634 - 28818
Alignment:
| Q |
258 |
tcttctcttctaacagaagcaactctgtagggaggagagcctgccgatcgagcgaaaggatccatacggctttcagggggagctgcttttacagcctact |
357 |
Q |
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| T |
28634 |
tcttctcttcgaacagaagcaactctgtagggaggagagcctgccgatcgagcgaagggatccatacggctttcagggggagctgcttttacagcctact |
28733 |
T |
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| Q |
358 |
ggtatttaagtaacggacgtgtttaattaattttcatgatgattcattcaattcgttcgccgggaagtgcaagctttgcgaacca |
442 |
Q |
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| T |
28734 |
ggtatttaagtaacggacgtgtttaattaattttcatgatgattcattcaattcgttcgccgggaagtgcaagctttgcgaacca |
28818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 9e-67; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 9e-67
Query Start/End: Original strand, 62 - 258
Target Start/End: Original strand, 6101423 - 6101620
Alignment:
| Q |
62 |
ttccccaaccaattcggtcgataaaatgagaggtatatcttccttatgtcgtttcatttgtttgacaatt-acttatgtcataactgtcatcgaggtatt |
160 |
Q |
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| T |
6101423 |
ttccctaaccaattcggtcgataaagtgagagttatatcttccttatgtcatttcatttgtttgacaattcacttatgtcataactgtcattgaggtatt |
6101522 |
T |
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| Q |
161 |
cagaccatccgcggtctctctcaattcttgtagttcttctagccaatcatgaacttttggtttgcgcttttttcgcagcaactgttttataatataat |
258 |
Q |
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| T |
6101523 |
cagaccatatgtggtttctctcaattcttgtagttcttctagctaatcataaacttttggtttgcgcttttttccctgcagttgttttataatataat |
6101620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 912 - 1003
Target Start/End: Original strand, 6111386 - 6111477
Alignment:
| Q |
912 |
ccatttacgaccattttctactcttgtaacgtgtttctagtagtgctcgtgttttgctctacccatgatcaatatctttcctaaacacagat |
1003 |
Q |
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| T |
6111386 |
ccatttaagaccattttctactcttgtaacatgtttccagcagtgctcgtgttttcctctacccattatcaatatctttcctaaacacagat |
6111477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 458 - 519
Target Start/End: Original strand, 6101646 - 6101707
Alignment:
| Q |
458 |
cacttcttttaagcgtttaatctcactttcagaatcatatacattcaaattgtttggattct |
519 |
Q |
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| T |
6101646 |
cacttcttttaagcgtttaatctcactttcagaatcacttacattcaaattgcttggattct |
6101707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 618 - 688
Target Start/End: Original strand, 6101983 - 6102050
Alignment:
| Q |
618 |
ttcagtgtagctaaaatataggtattatccgaaagatatttaagacagaaaaaagtggttaaacccatata |
688 |
Q |
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| T |
6101983 |
ttcaatgtagctaaaatataggtattatttgaaagatatttaagagag---aaagtggttaaatccatata |
6102050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 912 - 974
Target Start/End: Original strand, 6209967 - 6210029
Alignment:
| Q |
912 |
ccatttacgaccattttctactcttgtaacgtgtttctagtagtgctcgtgttttgctctacc |
974 |
Q |
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| T |
6209967 |
ccatttacgaccattttctacttctgtaacgtgtttccagcaatgctcatgttttcctctacc |
6210029 |
T |
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