View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2955_low_4 (Length: 237)

Name: NF2955_low_4
Description: NF2955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2955_low_4
NF2955_low_4
[»] chr6 (4 HSPs)
chr6 (78-222)||(24797560-24797706)
chr6 (1-42)||(9975048-9975089)
chr6 (1-42)||(24797482-24797523)
chr6 (1-35)||(29408072-29408106)
[»] chr7 (5 HSPs)
chr7 (1-42)||(17883309-17883350)
chr7 (1-42)||(26402778-26402819)
chr7 (1-42)||(5248629-5248670)
chr7 (1-42)||(47405226-47405267)
chr7 (1-42)||(41514287-41514328)
[»] chr8 (6 HSPs)
chr8 (1-41)||(44254124-44254164)
chr8 (1-42)||(33650077-33650118)
chr8 (1-42)||(38236253-38236294)
chr8 (1-42)||(42704374-42704415)
chr8 (1-41)||(34336470-34336510)
chr8 (1-36)||(15271087-15271122)
[»] chr1 (7 HSPs)
chr1 (1-40)||(43492126-43492165)
chr1 (1-42)||(3483109-3483150)
chr1 (1-42)||(44958303-44958344)
chr1 (1-42)||(45925562-45925603)
chr1 (1-42)||(49003718-49003759)
chr1 (1-42)||(698822-698863)
chr1 (1-42)||(25670767-25670808)
[»] chr5 (5 HSPs)
chr5 (1-42)||(591220-591261)
chr5 (1-42)||(23129411-23129452)
chr5 (1-42)||(27146941-27146982)
chr5 (1-42)||(40872309-40872350)
chr5 (1-41)||(39047004-39047044)
[»] chr4 (6 HSPs)
chr4 (1-42)||(20180219-20180260)
chr4 (1-41)||(28695835-28695875)
chr4 (1-42)||(5091839-5091880)
chr4 (1-42)||(21988458-21988499)
chr4 (1-38)||(46088516-46088553)
chr4 (1-42)||(54495550-54495591)
[»] chr2 (2 HSPs)
chr2 (1-42)||(27501731-27501772)
chr2 (1-42)||(18375131-18375172)
[»] chr3 (2 HSPs)
chr3 (1-41)||(32734750-32734790)
chr3 (1-41)||(11465622-11465662)


Alignment Details
Target: chr6 (Bit Score: 97; Significance: 8e-48; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 24797560 - 24797706
Alignment:
Q  78 ggttcttgttagcattttttgtaagcctttaaggttgaaatatgaatttccttaatnnnnnnnnn--ggttgaaatatgaattgttgatcagacgatctc 175  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||            | |||||||||||||||||||||||||||||||    
T  24797560 ggttcttgttagcattttttgtgagcctttaaggttgaaatatgaatttccttaaaaaaaaaaaaaagtttgaaatatgaattgttgatcagacgatctc 24797659  T
Q  176 gaacctactgattgcatgacaacatcatttttcgactgcacataaat 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  24797660 gaacctactgattgcatgacaacatcatttttcgactgcacataaat 24797706  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9975089 - 9975048
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||| ||| ||||||||||||||||||||||||||||||    
T  9975089 tcataaactttaacaaaaatttactatttaaagttactaaac 9975048  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24797482 - 24797523
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||| ||||||||||| ||||||||||||||||||||||    
T  24797482 tcataaactttgacaaaaacttactatttaaagttactaaac 24797523  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 29408072 - 29408106
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagtt 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  29408072 tcataaattttgacaaaaacttactatttaaagtt 29408106  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 17883350 - 17883309
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  17883350 tcataaattttgacaaaaacttactatttaaagttactaaac 17883309  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26402819 - 26402778
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  26402819 tcataaattttgacaaaaacttactatttaaagttactaaac 26402778  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5248670 - 5248629
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||| ||||||||||| ||||||||||||||||||||||    
T  5248670 tcataaactttgacaaaaacttactatttaaagttactaaac 5248629  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 47405267 - 47405226
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||| ||||||||||| ||||||||||||||||||||||    
T  47405267 tcataaactttgacaaaaacttactatttaaagttactaaac 47405226  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 41514328 - 41514287
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||| |||||| |||| ||||||||||||||||||||||    
T  41514328 tcataaactttgactaaaacttactatttaaagttactaaac 41514287  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 44254164 - 44254124
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaa 41  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  44254164 tcataaattttgacaaaaacttactatttaaagttactaaa 44254124  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33650077 - 33650118
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||| ||||||||||||| ||||||||||||||||||||||    
T  33650077 tcatacattttgacaaaaacttactatttaaagttactaaac 33650118  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38236294 - 38236253
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  38236294 tcataaattttgacaaaattttactatttaaagttattaaac 38236253  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42704374 - 42704415
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||||||||||||||| |||||||||||||||| |||||    
T  42704374 tcataaattttgacaaaaacttactatttaaagttagtaaac 42704415  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34336510 - 34336470
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaa 41  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  34336510 tcataaactttgacaaaaacttactatttaaagttactaaa 34336470  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 15271087 - 15271122
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagtta 36  Q
    ||||||||||||||||||| ||||||||||||||||    
T  15271087 tcataaattttgacaaaaacttactatttaaagtta 15271122  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 43492165 - 43492126
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaa 40  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  43492165 tcataaactttgacaaaaatttactatttaaagttactaa 43492126  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3483109 - 3483150
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||| ||||||||||| ||||||||||||||||||||||    
T  3483109 tcataaactttgacaaaaacttactatttaaagttactaaac 3483150  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44958344 - 44958303
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||| ||| ||||||||||||||||||||||||||||||    
T  44958344 tcataaactttaacaaaaatttactatttaaagttactaaac 44958303  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45925562 - 45925603
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||| ||||||||||| ||||||||||||||||||||||    
T  45925562 tcataaactttgacaaaaacttactatttaaagttactaaac 45925603  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 49003718 - 49003759
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  49003718 tcataaactttgacaaaaatttactatttaaagttattaaac 49003759  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 698863 - 698822
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||| ||||| ||||| ||||||||||||||||||||||    
T  698863 tcataaactttgataaaaacttactatttaaagttactaaac 698822  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25670808 - 25670767
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||| ||| ||||||| ||||||||||||||||||||||    
T  25670808 tcataaactttaacaaaaacttactatttaaagttactaaac 25670767  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 591261 - 591220
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||| ||||||||||| ||||||||||||||||||||||    
T  591261 tcataaactttgacaaaaacttactatttaaagttactaaac 591220  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23129411 - 23129452
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||| ||||||||||| ||||||||||||||||||||||    
T  23129411 tcataaactttgacaaaaacttactatttaaagttactaaac 23129452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27146941 - 27146982
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||| ||||||||||| ||||||||||||||||||||||    
T  27146941 tcataaactttgacaaaaacttactatttaaagttactaaac 27146982  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40872309 - 40872350
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||| ||||| ||||| ||||||||||||||||||||||    
T  40872309 tcataaactttgataaaaacttactatttaaagttactaaac 40872350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39047004 - 39047044
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaa 41  Q
    ||||||| ||||| ||||||| |||||||||||||||||||    
T  39047004 tcataaactttgagaaaaattaactatttaaagttactaaa 39047044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 20180260 - 20180219
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||| ||||||||||||||||||||||||||| ||||||    
T  20180260 tcataaactttgacaaaaatttactatttaaagttcctaaac 20180219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28695835 - 28695875
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaa 41  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  28695835 tcataaactttgacaaaaatttactatttaaagttattaaa 28695875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5091880 - 5091839
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||| ||| ||||||||||| ||||||||||||||||||    
T  5091880 tcataaaatttaacaaaaatttattatttaaagttactaaac 5091839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 21988499 - 21988458
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||| ||||||||||| |||||||||||||||| |||||    
T  21988499 tcataaactttgacaaaaacttactatttaaagttattaaac 21988458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 46088553 - 46088516
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttact 38  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  46088553 tcataaactttgacaaaaacttactatttaaagttact 46088516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 54495550 - 54495591
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||| ||||| ||||| ||||||||||||||||||||||    
T  54495550 tcataaactttgataaaaacttactatttaaagttactaaac 54495591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27501772 - 27501731
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||| ||||||||||| ||||||||||||||||||||||    
T  27501772 tcataaactttgacaaaaacttactatttaaagttactaaac 27501731  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18375131 - 18375172
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaac 42  Q
    ||||||| ||||||||||| |||||||||||||| |||||||    
T  18375131 tcataaactttgacaaaaacttactatttaaagtcactaaac 18375172  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 32734750 - 32734790
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaa 41  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  32734750 tcataaattttgacaaaaacttactacttaaagttactaaa 32734790  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 11465662 - 11465622
Alignment:
Q  1 tcataaattttgacaaaaatttactatttaaagttactaaa 41  Q
    ||||||| ||||||||||| ||||||||||||||| |||||    
T  11465662 tcataaactttgacaaaaacttactatttaaagtttctaaa 11465622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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