View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2957_low_1 (Length: 297)
Name: NF2957_low_1
Description: NF2957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2957_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 28402145 - 28402410
Alignment:
| Q |
16 |
agcacagatcatttaacttgtgatcgagaactttttacagaactcgacaaatcttattcttatgttatcagagttgcgaatggagcaaaaattacagtag |
115 |
Q |
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| T |
28402145 |
agcacagatcatttaacttgtgatcgagaactttttacacaactcgacaaatcttattcttatgtgatcagagttgcgaatggagcaaaaattacagtag |
28402244 |
T |
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| Q |
116 |
aaggcattggaacagttgtatttaagaattactcaggttcgaaactagttttgaatgttttatatatgttcctcaaatttctgaaaatcttttaagtgtt |
215 |
Q |
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| T |
28402245 |
aaggcattggaacagttgtatttaagaatcactcaggttcgaaactagttttgaatgttt--tatatgttcctcaaatttctgaaaatctcttaagtgtt |
28402342 |
T |
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| Q |
216 |
catgaattgttgaagaatggctacaaagtgttatttgaacatgaaaattgtgtgatttatgaccaaaa |
283 |
Q |
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| T |
28402343 |
cctgaattgttgaagaatggctacaaagtgttatttgaacatgaaaattgtgtgatttatgaccaaaa |
28402410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 19931104 - 19931366
Alignment:
| Q |
19 |
acagatcatttaacttgtgatcgagaactttttacagaactcgacaaatcttattcttatgttatcagagttgcgaatggagcaaaaattacagtagaag |
118 |
Q |
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| T |
19931104 |
acagatcatttaacttgtgatcgagatttttttacagaactcgacaaatcttattcttctgtgatgacagttgcgaatggagcaaatattacagcagaag |
19931203 |
T |
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| Q |
119 |
gcattggaacagttgtatttaagaattactcaggttcgaaactagttttgaatgttttatatatgttcctcaaatttctgaaaatcttttaagtgttcat |
218 |
Q |
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| T |
19931204 |
gcattggaacagttgtatttaagaatcactcaggttcgaaactagttttgaatgttt--tatatgttcctcaaatttctgaaaatcttttaagtgttcct |
19931301 |
T |
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| Q |
219 |
gaattgttgaagaatggctacaaagtgttatttgaacatgaaaattgtgtgatttatgaccaaaa |
283 |
Q |
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| T |
19931302 |
gaattgttgaataatggctacaaagtgttatttgaacatgaaaattgtgtgattaatgaccaaaa |
19931366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 26 - 283
Target Start/End: Complemental strand, 19134189 - 19133934
Alignment:
| Q |
26 |
atttaacttgtgatcgagaactttttacagaactcgacaaatcttattcttatgttatcagagttgcgaatggagcaaaaattacagtagaaggcattgg |
125 |
Q |
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| T |
19134189 |
atttaacttgtgatcgagaagtttttaccgaactcgacaaatcttattcttctgtgattagagttgcgaatggagcagaaattacatcagaaggcattgg |
19134090 |
T |
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| Q |
126 |
aacagttgtatttaagaattactcaggttcgaaactagttttgaatgttttatatatgttcctcaaatttctgaaaatcttttaagtgttcatgaattgt |
225 |
Q |
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| T |
19134089 |
aacaatagtatttaagaatcattcaggttccaaactagttttgaatgtttt--atatgttcctcaaatttccgaaaatcttttaagtgttcctcaattgt |
19133992 |
T |
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| Q |
226 |
tgaagaatggctacaaagtgttatttgaacatgaaaattgtgtgatttatgaccaaaa |
283 |
Q |
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| T |
19133991 |
tgaagaatggttacaaagtgttatttgaacatgaaagttgtatgattaatgaccaaaa |
19133934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 111 - 272
Target Start/End: Original strand, 32531514 - 32531673
Alignment:
| Q |
111 |
agtagaaggcattggaacagttgtatttaagaattactcaggttcgaaactagttttgaatgttttatatatgttcctcaaatttctgaaaatcttttaa |
210 |
Q |
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||||||||||||||| |||||| || |||| | | ||||||||| |||| | ||| ||||||||||||| | |||| || || | ||| |||||||| |
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| T |
32531514 |
agtagaaggcattgggacagttttagttaaaagtcactcaggttataaacaaatttcgaatgttttatat--gctcctaaacttaatcaaagtcttttaa |
32531611 |
T |
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| Q |
211 |
gtgttcatgaattgttgaagaatggctacaaagtgttatttgaacatgaaaattgtgtgatt |
272 |
Q |
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| T |
32531612 |
gtgttcctcagttgttgacgaaaggctacaaagtgttgtttgaacatgagaagtgtgtgatt |
32531673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 30759738 - 30759645
Alignment:
| Q |
87 |
agttgcgaatggagcaaaaattacagtagaaggcattggaacagttgtatttaagaattactcaggttcgaaactagttttgaatgttttatat |
180 |
Q |
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| T |
30759738 |
agttgcgaatggagcacctattgaggtagaaggcattggaacaattacaattagaaatcactcaggtttgaaactaattttgaatgttttatat |
30759645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 30749458 - 30749394
Alignment:
| Q |
112 |
gtagaaggcattggaacagttgtatttaagaattactcaggttcgaaactagttttgaatgtttt |
176 |
Q |
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| T |
30749458 |
gtagaaggctttggaacagttacaattaaacatcactcaggtttgaaactaattttgaatgtttt |
30749394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 5291822 - 5291891
Alignment:
| Q |
200 |
aaatcttttaagtgttcatgaattgttgaagaatggctacaaagtgttatttg-aacatgaaaattgtgt |
268 |
Q |
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| T |
5291822 |
aaatcttttaagtgttgttcaaatgttgcaaaatggctacaaagtgctatttgaaacataaaaattgtgt |
5291891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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